Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botrytis_20paeoniae_20[genbank_20GCA_5F001005785.1_202015-05-11]
11,700 sequences; 44,242,179 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq305 288 1e-75
seq822 286 4e-75
seq1158 230 2e-58
seq936 118 1e-24
>seq305
Length=782
Score = 288 bits (318), Expect = 1e-75
Identities = 179/191 (94%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||
Sbjct 667 GGAACCAGGACTTTTACTTTGAAAAAATCAGAGTGTTCAAAGCAGGCCTATGCTCGAATA 608
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 607 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 549
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 548 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 489
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 488 TTGGATTTATT 478
>seq822
Length=844
Score = 286 bits (316), Expect = 4e-75
Identities = 180/192 (94%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTT-GAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAAT 59
|||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct 670 GGAACCAGGACTTTTACTTTCGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAAT 611
Query 60 ACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG 119
|||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 610 ACATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG 551
Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179
|||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 550 -CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATT 492
Query 180 CTTGGATTTATT 191
||||||||||||
Sbjct 491 CTTGGATTTATT 480
>seq1158
Length=352
Score = 230 bits (254), Expect = 2e-58
Identities = 158/172 (92%), Gaps = 5/172 (3%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTT-ACTTTGAAAA-AATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAA 58
||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 182 GGAACCAGGACTTTTTACTTTGAAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAA 241
Query 59 TACATTACCATGGAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTAGGTTTCTAGGAC 117
||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 242 TACATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTGATTTTGTTGGTTTCTAGGAC 301
Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAA-TTGTCA 168
|| |||||||||| |||| ||||||||||||| ||||||||||| ||||||
Sbjct 302 CG-CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTTGTCA 352
>seq936
Length=501
Score = 118 bits (130), Expect = 1e-24
Identities = 80/87 (92%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAG-CAGGCCTTTG-CTCGAA 58
||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||||||
Sbjct 87 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCCAGGCCTATGACTCGAA 28
Query 59 TACATTACCATGGAATAATAGAATAGG 85
||||||| || |||||||||||||||
Sbjct 27 TACATTAGCAAAGAATAATAGAATAGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511941968000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |