Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1245 190 4e-46 seq3935 181 2e-43 seq1923 122 2e-25 >seq1245 Length=1300 Score = 190 bits (210), Expect = 4e-46 Identities = 242/326 (74%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | ||||||||| || ||||| | | || | Sbjct 584 AGGGGAGTGAAATAGATCCTGAAACCGTGTGCCTACAAGTAGTTAGAGCCCATTAATG-G 526 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCG-TCACCAGCGAGGTTAAG 129 |||| |||||||||||| | ||||| || ||||||| || | || || |||||||| Sbjct 525 GTGATAGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA--CGATTACATGCAAGGTTAAG 468 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GAGTTGGTGGC 188 | || || ||||| || ||||||||| || || ||||||| |||| |||| Sbjct 467 T--TGAAGAGACGG-AGCCGCAGCGAAAGCGAGTCTGAATAGGGCGATAGAGTATGTGGT 411 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| ||||||| |||||||||||| | |||| ||||||| |||||| | ||| Sbjct 410 CGTAGACCCGAAACCAGGTGATCTACCCATGTCCAGGGTGAAGTCCAGGTAACACTGGAT 351 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| ||||||| |||||||||||| |||||| | |||||| || |||| Sbjct 350 GGAGGCCCGAACCCACGCACGTTGAAAAGTGCGGGGATGAGGTGTGGGTAGCGGAGAAAT 291 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 |||||| |||| ||| |||||| || Sbjct 290 TCCAATCGAACTTGGAGATAGCTGGT 265 >seq3935 Length=1602 Score = 181 bits (200), Expect = 2e-43 Identities = 245/336 (73%), Gaps = 14/336 (4%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| | | |||||||||| || |||| | Sbjct 263 CCCGATGAGGGGAGTGAAACAGTACCTGAAACGGATTGCCTACAAGCAGTTGGAGG---G 319 Query 64 TGATTCGG---TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120 | || | |||| |||| ||| |||||||||| | || || ||| | || | ||| Sbjct 320 TCCTTGAGGCCTGACAGCGTACCTCTTGCATAATGGGTCTGTGACTTAAT-GTTTCAAGC 378 Query 121 GAGGTTAAGGGCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG- 178 || ||||| | || || ||| || || ||||||||| || || |||||||| Sbjct 379 AAGCTTAAG-----CCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGACAT 433 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 |||| | | ||||| ||||||| | |||||| || || |||| ||||| ||||| Sbjct 434 AGTTTGAAGTATTAGACCCGAAACCCGGCGATCTAGGCATGACCAGGATGAAGGTGCGGT 493 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 ||| || |||||| |||||||| | |||||||||||||| ||||||| | | | || Sbjct 494 AACACGCACTGGAGGTCCGAACCGATTAACGTTGAAAAGTTACCGGATGAGTTGTGTTTA 553 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||| | ||||||||||| || Sbjct 554 GGGGTGAAAGGCCAATCAAGCCGGGAAATAGCTGGT 589 >seq1923 Length=740 Score = 122 bits (134), Expect = 2e-25 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 ||||| || |||| |||| | || ||||||| ||| | ||| ||||| ||||||| Sbjct 681 AGCCGTAGAGAAATCGAGTCCGAATAGGGCGATCAGTCGCTGGGTGTAGACCCGAAACCA 622 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGT 264 |||||||| ||| | |||| ||||| || ||||| || |||||| |||||||| Sbjct 621 AGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCGAC 562 Query 265 AAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGA 324 | |||| ||| | ||||||| | || |||||||||||||| || |||||| ||| Sbjct 561 TAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGA 502 Query 325 AATAGCTCGT 334 ||||||| || Sbjct 501 AATAGCTGGT 492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972752809472