Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq3935 149 9e-34 seq3495 84.2 3e-14 seq132 77.0 5e-12 >seq3935 Length=1602 Score = 149 bits (164), Expect = 9e-34 Identities = 186/251 (74%), Gaps = 13/251 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTA---CCGTCTTCG 57 |||| ||||| ||||||||||||||||| || ||||| ||| ||| ||| ||| | Sbjct 1521 CTTAACCTTCAGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTGAAGCCGACTTAG 1462 Query 58 CACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC 117 || | ||||||||||| |||||||||||| ||| || || ||| || || ||| Sbjct 1461 CAGAGCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCCTGTGC--CCCCCGACAG- 1405 Query 118 TCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 | | | || ||| | ||| | |||||| |||||| ||||| | || |||||| Sbjct 1404 --AGCTTGCGCTT----AGCCGGGGC-CTCCTTCTTCCGAAGGTACGGAGGCAATTTGCC 1352 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 || |||||| | ||| ||| | | | |||||| |||| ||||||||||||||||||||| Sbjct 1351 GAGTTCCTTCAGGACACTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGTGTC 1292 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 1291 GGTTTCGGGTA 1281 >seq3495 Length=1081 Score = 84.2 bits (92), Expect = 3e-14 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGG-GCCATTTTGCCGAATTCCTTAACCACAGTTCA 198 |||| | |||| |||||||||||||| | || |||||||| |||||||| | ||||| Sbjct 965 TGGCCCTCCTTATCCCGAAGTTACGGTAGTCAATTTGCCGAGTTCCTTAAGGATTGTTCA 1024 Query 199 CCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 | | |||||||| ||||||||||| || || ||||| Sbjct 1025 CTCAAACGCCTTTGTATTCTCTACTTGCTTACTTGTGT 1062 >seq132 Length=602 Score = 77.0 bits (84), Expect = 5e-12 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 169 CATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC 228 ||||||||||| ||||||||| | ||||| | || | |||||| ||||||| | | | Sbjct 3 CATTTTGCCGAGTTCCTTAACGAGAGTTCTCTCGCTCACCTTAGGATTCTCTCCTCGCCT 62 Query 229 ACCTGTGTCGGTTTACGGTA 248 |||||||||||||| ||||| Sbjct 63 ACCTGTGTCGGTTTGCGGTA 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694367367323