Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1245 329 1e-87 seq3935 280 5e-73 seq1923 221 4e-55 >seq1245 Length=1300 Score = 329 bits (364), Expect = 1e-87 Identities = 438/601 (73%), Gaps = 23/601 (4%) Strand=Plus/Plus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGA 62 ||||||||| |||| || | |||||||| || || | | | | |||||||||| Sbjct 105 GACTACGGATCTTA-TCACTCGCAGTCTGACTCCCAAGGA-TAAGTATTTGGCATTCGGA 162 Query 63 GTTTGGTTGATTTCGGTAAGCTTGTGGGC-CCCCTAGACCATCCAGTGCTCTACCTCCGG 121 ||||| ||| |||||||| | |||| ||||||| ||| ||||||||||||||| Sbjct 163 GTTTGTCTGAATTCGGTAACCCGATGGGGGCCCCTAGTCCAAACAGTGCTCTACCTCC-- 220 Query 122 GAAGAAACACGC---GACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAA 178 || | | | || ||| |||||| ||||||| |||||||||||||| | || Sbjct 221 -AATACTCTTACCTTGAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAA 279 Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||| |||||| |||| || ||| ||||| |||||||| || |||||||| | ||||| Sbjct 280 GTTCGATTGGAATTTCTCCGCTACCCACACCTCATCCCCGCACTTTTCAACGTGCGTGGG 339 Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCT 298 ||||| |||||| | || ||||| | ||||| |||| ||||| |||||||| | | | Sbjct 340 TTCGGGCCTCCATCCAGTGTTACCTGGACTTCACCCTGGACATGGGTAGATCACCTGGTT 399 Query 299 TCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCC 358 |||||||| | |||| |||||||||| |||||||||||||| ||||| | Sbjct 400 TCGGGTCTACGACCACATACTCTATCGCCCTATTCAGACTCGCTTTCGCTGCGGCTCCGT 459 Query 359 CAC-ACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACG 417 | | | ||||||| || | || ||||||| || ||||||| ||||||||||| Sbjct 460 CTCTTCAACTTAACCTTGC-ATGTAATCGTAACTCGCCGGTTCATTCTACAAAAGGCACG 518 Query 418 CCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAG 477 | ||||| | | || || |||| || ||||||||||| |||||||| Sbjct 519 CTATCACC-----CATTAATGG-------GCTCTAACTACTTGTAGGCACACGGTTTCAG 566 Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 | |||||||||||||| | ||||| ||||||||||||||||||||||||| || | || Sbjct 567 GATCTATTTCACTCCCCTTCCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACT 626 Query 538 ATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTT 597 ||||||||| | ||||||||||| ||| | |||||| || | ||| ||| |||| Sbjct 627 ATCGGTCACTAGGGAGTATTTAGCCTTGGGAGATGGTCCTCCCTGCTTCCGACGGGATTT 686 Query 598 C 598 | Sbjct 687 C 687 >seq3935 Length=1602 Score = 280 bits (310), Expect = 5e-73 Identities = 424/591 (72%), Gaps = 19/591 (3%) Strand=Plus/Minus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGA 62 ||| ||||| |||| | ||||| |||| | ||| | | ||||| | || ||||||| Sbjct 748 GACGACGGACCTTAG-CACCCGCCGTCTGTCTCCCG-GATATCACTCCTAGGTATTCGGA 691 Query 63 GTTTGGTT-GATTTCGGTA-AGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCG 120 |||||||| || || |||| | || | | |||| | ||||||||||||||||| || Sbjct 690 GTTTGGTTAGAGTT-GGTAGATCTCGCGACCCCCGCAT-CCATCCAGTGCTCTACCCCCT 633 Query 121 GGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGT 180 | || ||| || |||| ||| ||||| |||||||||||||| | | Sbjct 632 AGGGTGTCCATCCGAGGCACTACCTCAATAGTTTTCGCGGAGAACCAGCTATTTCCCGGC 573 Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||||||||||||||||||||| |||| |||||| | | |||||||| | | | |||| Sbjct 572 TTGATTGGCCTTTCACCCCTAAACACAACTCATCCGGTAACTTTTCAACGTTAATCGGTT 513 Query 241 CGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTC 300 ||| |||||| || ||||| ||||| |||| |||| |||||| | | ||| Sbjct 512 CGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGTCATGCCTAGATCGCCGGGTTTC 453 Query 301 GGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA 360 |||||| | | ||| |||||||||| |||||||||||||| || |||| || Sbjct 452 GGGTCTAATACTTCAAACTATGTCGCCCTATTCAGACTCGCTTTCGCTGCGCCTACACCT 393 Query 361 CACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCG 420 ||| |||| || || | ||| || || ||| | |||| | ||| ||| |||| | Sbjct 392 ACCGGCTTAAGCTTGCTTGA-AACATTAAGTCACAGACCCATTATGCAAGAGGTACGCTG 334 Query 421 TCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTA 480 ||| || ||| || | | |||| || | ||||||||| |||||||||| Sbjct 333 TCA---GG--CCTCAAGGAC------CCTCCAACTGCTTGTAGGCAATCCGTTTCAGGTA 285 Query 481 CTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTAT 539 || ||||||||||| | ||||| ||||||||||||||||||||||||| || |||||| Sbjct 284 CTGTTTCACTCCCCTCATCGGGGTGCTTTTCACCTTTCCCTCACGGTACTAGTTCGCTAT 225 Query 540 CGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 |||||| | |||||||||||||| |||||||||| ||| |||| || Sbjct 224 CGGTCATGTACGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 174 >seq1923 Length=740 Score = 221 bits (244), Expect = 4e-55 Identities = 273/364 (75%), Gaps = 7/364 (2%) Strand=Plus/Plus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGC 110 ||| |||||||||||| | || |||||| | | |||||||| | | |||||| Sbjct 380 CGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGC 439 Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||| ||| | | || || || || |||||||| |||||| ||||||||||| Sbjct 440 TCTACCCCCGC-AGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCT 498 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT-CAAC 229 || | ||||||| || ||||||||||||||||||||| |||||| || |||||| |||| Sbjct 499 ATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCGCT-AGTTTTGCAAC 557 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 ||| ||||||| |||||| | |||| ||||| |||| |||||||||||| Sbjct 558 ACTAGTCGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGAT 617 Query 290 CACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTA 349 ||||| | ||||||||| | | || ||| || ||||||||||||||||| |||| ||| Sbjct 618 CACTTGGTTTCGGGTCTACACCCAGCGACTGAT-CGCCCTATTCGGACTCGATTTCTCTA 676 Query 350 CGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAA 409 ||||| ||| | | ||||||||| || || || | || |||| | | |||| | ||| Sbjct 677 CGGCTTCCCTATTC-GGTTAACCTTGCCACTGAATG-TAAGTCGCTGACCCATTATACAA 734 Query 410 AAGG 413 |||| Sbjct 735 AAGG 738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817511828224