Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3935 289 7e-76 seq1245 248 2e-63 seq1923 183 8e-44 >seq3935 Length=1602 Score = 289 bits (320), Expect = 7e-76 Identities = 325/416 (78%), Gaps = 18/416 (4%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| |||| ||| |||||||| ||||| || ||||||||| |||||||| || |||| Sbjct 549 CACAACTCAT-CCGGTAACTTTT-CAACGTTAATCGGTTCGGACCTCCAGTGCGT-GTTA 493 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCC-CAGC 128 || ||||| || |||| ||| | ||||||||| ||||| |||||||| | | || Sbjct 492 CCGCACCTT-CATCCTGGTCAT-GCCTAGATCGCCGGGTTT-CGGGTCTAATACTTCAA- 437 Query 129 GACTA-GACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTT 186 |||| | ||||||| | ||||||||||| |||| ||||| | |||| | |||||||| Sbjct 436 -ACTATGTCGCCCTATTCAGACTCGCTTT-CGCTGCGCCTACACCTACCGGCTTAAGCTT 379 Query 187 TGCCACTGAAAA--TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 || ||||| |||||| | |||||||||| ||| |||||||| |||| | ||| Sbjct 378 -GCT--TGAAACATTAAGTCACAGACCCATTATGCAAGAGGTACGCTGTCAGGCCTCAAG 322 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | |||| |||||||||| ||| | |||||||| || ||||||||||||| |||| Sbjct 321 GACC-CTCCAACTGCTTGTAGGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGG 263 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| ||||||||||||||||||||||| |||||||||| | ||||||||| Sbjct 262 GTGCTTTTCACCTTTCCCTCACGGTACTAGTTCGCTATCGGTCATGTACGAGTATTTAGG 203 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| |||||||||||| |||||||| || | |||| ||| |||||||| Sbjct 202 CTTGGAGGGTGGTCCCCCCATGTTCAGACAGGATTACACGTGTCCCGCCCTACTCG 147 >seq1245 Length=1300 Score = 248 bits (274), Expect = 2e-63 Identities = 298/392 (76%), Gaps = 11/392 (3%) Strand=Plus/Plus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| || ||||||| |||||| ||| |||||| ||| || |||| | Sbjct 323 TTTTCAACGTGCGTGGGTTCGGGCCTCCATCCAGT-GTTACCTGGACTT-CACCCTGGAC 380 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA-CGCCCTAGTAAGA 148 || || |||||| || ||||| |||||||| || | ||| | ||||||| | ||| Sbjct 381 ATGGG-TAGATCACCTGGTTT-CGGGTCTACGACC-ACATACTCTATCGCCCTATTCAGA 437 Query 149 CTCGCTTTTCGCTACGCCTCCC-CTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCT 207 |||||||| |||| || |||| || ||| | | | |||| | | ||| |||| Sbjct 438 CTCGCTTT-CGCTGCGGCTCCGTCTCTTCAACTTAACCTTGCATGTAATCGTAACTCGCC 496 Query 208 GACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGC 267 | |||| ||||||||| |||| ||||||| || ||||||| ||| |||||| || Sbjct 497 GGTTCATTCTACAAAAGGCACGCTATCACCCATTAA--TGGGCTCTAACTACTTGTAGGC 554 Query 268 ATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACG 327 | |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| Sbjct 555 ACACGGTTTCAGGATCTATTTCACTCCCCT-TCCGGGGTGCTTTTCACCTTTCCCTCACG 613 Query 328 GTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATAT 387 ||||| ||||||||||||||| | | ||||||||||||||| |||||||| ||| | Sbjct 614 GTACTGGTTCACTATCGGTCACTAGGGAGTATTTAGCCTTGGGAGATGGTCCTCCCTGCT 673 Query 388 TCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || ||| ||||||||| ||| | ||||| Sbjct 674 TCCGACGGGATTTCTCGTGTCCCGCCGTACTC 705 >seq1923 Length=740 Score = 183 bits (202), Expect = 8e-44 Identities = 182/224 (81%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| |||||| |||| |||| |||||||||||| |||||||| Sbjct 526 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGACCTCCAGTACC 583 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 584 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 638 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||| ||||||| | |||||| ||| | ||||| || |||||||||||||| Sbjct 639 CCAGCGACTGATCGCCCTATTCGGACTCGATTT-CTCTACGGCTTCCCTATTCGGTTAAC 697 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTA 227 ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 698 CTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241539769984