Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1923 513 5e-143 seq3935 309 1e-81 seq1245 239 2e-60 >seq1923 Length=740 Score = 513 bits (568), Expect = 5e-143 Identities = 421/501 (84%), Gaps = 17/501 (3%) Strand=Plus/Minus Query 1 TCGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 668 TCGAGTCCGAATAGGGCGATCAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTATCCA 609 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||||||||||||| |||||| | ||||||||||||||| |||| ||||| |||| Sbjct 608 TGGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCGACTAGTGTTGCAAAA 549 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 548 CTAGCGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 489 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | Sbjct 488 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATTACCTGCGGGGGTAGAGCACTGTTTAG 429 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTTTA 298 ||||||||||||| ||||||||||||||| |||||||||||||| |||| || || Sbjct 428 GCTAGGGGGTCATGGCGACTTACCAAACCTATGCAAACTCCGAATACCGCA-GAG---TA 373 Query 299 CCGC--GGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | || ||||| || ||| ||||||||| ||||| | | ||||| || || || || Sbjct 372 CAGCTTGGGAGACAGAGCACCGGGTGCTAACGTCCGGACTCAAGAGGGAAACAACCCAGA 313 Query 356 CTATCAGCTAAGGCCCCGAAA--TGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 | ||||||||| ||| ||| || ||||||| | |||||||| || ||||| Sbjct 312 CCGCCAGCTAAGGTCCCTAAAATTG---GCTAAGTGGGA--AACGAAGTGGGAAGGCTAA 258 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||| ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| Sbjct 257 AACAGTCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACT 199 Query 474 AGTCGAGGAGTCGGGCGTGGA 494 ||||| ||| ||| ||| Sbjct 198 GATCGAGTCGTCCTGCGCGGA 178 >seq3935 Length=1602 Score = 309 bits (342), Expect = 1e-81 Identities = 366/483 (76%), Gaps = 16/483 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTA---GACCCGAAACCAAGTGATCTACCC 58 |||||| ||| ||||||||| | | | | ||| ||||||||||| | |||||| | Sbjct 413 CGAGTCTGAATAGGGCGACA-TAGTTTGAAGTATTAGACCCGAAACCCGGCGATCTAGGC 471 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||| ||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||| Sbjct 472 ATGACCAGGATGAAGGTGCGGTAACACGCACTGGAGGTCCGAACCGATTAACGTTGAAAA 531 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||| ||||||| |||| |||||||||||||| || ||| | ||||||||||||||| Sbjct 532 GTTACCGGATGAGTTGTGTTTAGGGGTGAAAGGCCAATCAAGCCGGGAAATAGCTGGTTC 591 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTT 236 || ||||||||||| |||||||||||| | | | |||| | ||||||||||||||| Sbjct 592 TCCGCGAAAACTATTGAGGTAGTGCCTCGGATGGA-CACCCTAGGGGGTAGAGCACTG-G 649 Query 237 ATGGCT-AGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 |||| | ||||||| | || |||||| | |||||||||||| | | ||| Sbjct 650 ATGGATGCGGGGGTC-GCGAGATCTACCAACTCTAACCAAACTCCGAATACCTAGGAGTG 708 Query 296 TTA-CCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 || ||| | || || ||| |||||||||||||||| | | ||| || | || | Sbjct 709 ATATCCGGGAGACAGACGGC--GGGTGCTAAGGTCCGTCGTCAAAAGGGAAACAGCCCTG 766 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 || ||||||||| ||| || | || |||||| | || | || || | | || Sbjct 767 ACCTACAGCTAAGGTCCCCAAGTCACGTCTAAGTGGGA--AAGCATGTGGGAATCCCAAA 824 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 ||| | |||| |||||||| |||||||||| || |||||||| ||||||||||||||| Sbjct 825 ACAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACTG 883 Query 475 GTC 477 ||| Sbjct 884 GTC 886 >seq1245 Length=1300 Score = 239 bits (264), Expect = 2e-60 Identities = 323/444 (73%), Gaps = 6/444 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTG-GGT-GTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| || || ||| ||||||||||||||| |||||||||||| Sbjct 441 CGAGTCTGAATAGGGCGATAGAGTATGTGGTCGTAGACCCGAAACCAGGTGATCTACCCA 382 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || ||||| ||||| |||||||| |||||| |||||||||| | |||||||| Sbjct 381 TGTCCAGGGTGAAGTCCAGGTAACACTGGATGGAGGCCCGAACCCACGCACGTTGAAAAG 322 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | ||||||||| ||||||||| || |||| | || | |||||||| |||||||||||| Sbjct 321 TGCGGGGATGAGGTGTGGGTAGCGGAGAAATTCCAATCGAACTTGGAGATAGCTGGTTCT 262 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAA-GTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||||||| |||||| ||||||| ||| | || || |||||||||||||| Sbjct 261 CTCCGAAATAGCTTTAGGGCTAGCCTCAAGGTAAGAGTATTGGAGGTAGAGCACTGTTTG 202 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTA 298 | ||||||| | || ||||| || |||||||||||||| | | || | Sbjct 201 GACTAGGGGCCCCCATCGGGTTACCGAATTCAGACAAACTCCGAATGCCAAATACTTAT- 143 Query 299 CCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 || |||||| || | ||| |||| ||||| | ||||| || | || ||| | Sbjct 142 CCTTGGGAGTCAGACTGCGAGTGATAAGATCCGTAGTCAAGAGGGAAACAGCCCAGACCA 83 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG 418 ||||||||| ||| || | | ||||| || || || || ||||| ||||| Sbjct 82 CCAGCTAAGGTCCCAAAGTATACGTTAAGTGGAA--AAGGATGTGGAGTTGCTTAGACAA 25 Query 419 CTAGGATGTTGGCTTGGAAGCAGC 442 | ||||||||||||| |||||||| Sbjct 24 CCAGGATGTTGGCTTAGAAGCAGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689518037504