Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2228 178 1e-39 seq3934 170 2e-37 >seq2228 Length=283306 Score = 178 bits (196), Expect = 1e-39 Identities = 223/303 (74%), Gaps = 5/303 (2%) Strand=Plus/Plus Query 61080 TGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| | || |||| |||||||| ||||| || || ||||||||||| | || ||| | Sbjct 200980 TGAGCAGATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACCGCCGAAGAGAT 201039 Query 61140 CGATTTGTCCAAAGACATGAATGACTGG---GAGCGTTTATCGAGCGGTGAACAACATTT 61196 |||||||||||||||| | | |||||| || || || || ||||| | || Sbjct 201040 CGATTTGTCCAAAGACCTTCACGACTGGAATGATCGACTAAATGACGATGAACGCTACTT 201099 Query 61197 CATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATT 61256 ||| ||||||||||| |||||||||||||| ||||| |||||||| || ||| | | Sbjct 201100 CATCTCTCATGTGTTGGCCTTCTTTGCCGCTTCCGACGGCATCGTCAACGAAAATCTTCT 201159 Query 61257 GGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 || || ||| ||| || || || | | ||||| ||||| |||||||| ||||||| Sbjct 201160 TGAGCGCTTTAGCG-GCGAAGTTCAGATTCCAGAGGCCCGTTGCTTCTACGGTTTCCAGA 201218 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | |||||||| ||||||| |||| ||| | | ||||| ||||| || |||| || Sbjct 201219 TCATGATGGAGAACATCCACTCCGAGACCTACTCTTTGCTCATTGATACATATATCAAGG 201278 Query 61376 AGC 61378 ||| Sbjct 201279 AGC 201281 Score = 116 bits (128), Expect = 3e-21 Identities = 333/504 (66%), Gaps = 15/504 (3%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCC-TTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACG 61490 ||| || ||||||||| ||| || ||||| || |||| | | || || | |||| Sbjct 201403 GAAGGCTGATTGGGCCATTCGAT-GGATC--CAAGACAAGGAATCCACCTTCGCCCAACG 201459 Query 61491 ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTT 61550 || | || ||||| | || || ||| | || |||||||| || || || | || || Sbjct 201460 CCTGGTTGCCTTTGCAGCCGTTGAAGGTATCTTCTTCAGTGGCTCTTTCGCTTCTATTTT 201519 Query 61551 TTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACG 61610 ||||||||||||||||| |||||||||||||| || || ||||| ||||| || || Sbjct 201520 CTGGTTGAAGAAACGTGGCCTTATGCCCGGTCTCACTTTTTCGAATGAATTGATTTCCCG 201579 Query 61611 CGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCG 61670 |||||||| | || || ||||| | || ||| | | || |||| Sbjct 201580 TGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTC---TCCCACCTCCGCCATCG 201636 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAG---ATTGTTCGTGAGGCGGTAACTATCGAACAGGA 61727 || ||| || | | |||| || | ||||| || || || |||| Sbjct 201637 CCC--CGGCCCTTCG-GCCGTTGAGGCCATCATCACAGAGGCAGTTGAGATTGAGAAGGA 201693 Query 61728 ATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCA 61787 ||| | ||||| ||| | || | || | |||||||| || |||| || Sbjct 201694 ATTCTTAACTGATGCTCTTCCATGTGCCCTTCTTGGCATGAACGCCAAGCTCATGTGCCA 201753 Query 61788 GTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAA 61847 ||||| || |||||||||||| | ||| | || | |||||| | || | |||| || Sbjct 201754 ATATATCGAGTTTGTTGCCGACAGACTGCTTGTTGCTTTGGGCAACAAAAAGTTCTACAA 201813 Query 61848 TACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTT 61907 | | | ||||||||||| || ||||| | || ||| ||| |||||||| || || || Sbjct 201814 TGCCACCAACCCATTTGACTTTATGGATAACATCTCGTTGGCCGGCAAGACCAACTTCTT 201873 Query 61908 CGAGAAACGTGTAGGCGACTATCA 61931 |||||| || || || || || || Sbjct 201874 CGAGAAGCGGGTTGGTGATTACCA 201897 >seq3934 Length=413549 Score = 170 bits (188), Expect = 2e-37 Identities = 388/581 (67%), Gaps = 7/581 (1%) Strand=Plus/Plus Query 66288 GACACTT-GTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 ||| ||| || |||||| | || | |||||| || | || || || || ||| || Sbjct 408778 GACGCTTCGTTTGGACAAAACAAGGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAAC 408837 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGA 66406 ||||| || |||| || || ||||||||| || |||| | ||||| | ||||| Sbjct 408838 AGATCGGGGGTCCAAAGAGCAAGGAAGAGATCACGGGCTCTTACTTCCTCCTTTCCGTGG 408897 Query 66407 TTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCG 66466 ||||| || | || | ||||| ||||| |||| ||||| ||||| || || ||||| Sbjct 408898 TTTTTACGGAGATCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCA 408957 Query 66467 AACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACA 66526 || | ||| |||||| ||||||||||||||| || ||||| |||||| |||||| Sbjct 408958 AAGGCGCCAGGCCGTTTGTTGCCACCTTGGTCGACATATCGAGCTGTATTGTTAAAGACA 409017 Query 66527 CGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT 66586 || | ||| || |||| |||||||| ||| || || || | ||| ||| || Sbjct 409018 CGGAGCATGGGGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTC 409077 Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 || || ||| || | ||| ||||| ||||| || || ||||| || || ||| || Sbjct 409078 GCGCGAATACGATGGATATTAAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCA- 409136 Query 66647 TCGGCC---ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAG 66703 || | | || | | || || || ||| || |||| || | ||| | Sbjct 409137 --GGTCTTTAGAGTATCGTAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAA 409194 Query 66704 CATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTA 66763 || || | || |||| ||||| | || ||| || ||||| | ||| || ||| Sbjct 409195 CAGGAGGCCATCTGTGGTTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTA 409254 Query 66764 AAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGA 66823 || || | ||||||| ||| ||||| ||||| | ||||||| |||||||||| Sbjct 409255 AAATATTTCTGAGACATCAGATTATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGA 409314 Query 66824 ATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTC 66864 || || | ||| ||||| | | || ||| || || || Sbjct 409315 ATGCCAACCGCAACACGCATAATCATGTGTTGCGGACGCTC 409355 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 |||| | ||||| || || | ||||| || || | ||||| || ||||| ||||||| Sbjct 408439 TGGGCAAAGCAAGGGACGCCAAATTGCAAACTGCGACTTCGTCCGGCGCGGTGTACTCGA 408498 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 ||||| ||||||| || || || || || || | || | ||| |||||||||| Sbjct 408499 TGATTTCCGTGCACAAGTTGGAGCTCCGAATAGTTCCAAGGTTTTTTTGGTTACTCTTGC 408558 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | ||||| ||||| || || | |||| | || | || ||||| ||| | ||| | | Sbjct 408559 GGTTGCACGCATCTTTATAAAGCATGAAGGGGTTCCCAGTCTCTGTTTGAGCCTCCAAAA 408618 Query 66180 TGGCGTGCCAAAG 66192 | || | |||||| Sbjct 408619 TAGCATACCAAAG 408631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397544495158640