Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1130 508 1e-141 seq1895 87.8 3e-15 >seq1130 Length=5783 Score = 508 bits (562), Expect = 1e-141 Identities = 301/314 (96%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 2177 TGGTCCGGCCGGGCCTTTCCTTCTGGGGAGCCGCATGCCCTTCACTGGGTGTGTCGGGGA 2236 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2237 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 2296 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2297 TAGCATGGAATGATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 2356 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2357 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 2416 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 2417 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 2476 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 2477 ACGAAAGTTAGGGG 2490 >seq1895 Length=11580 Score = 87.8 bits (96), Expect = 3e-15 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 8 TCCGGCCGGGCCTTTCCTT-CTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66 |||||| |||||||||||| ||||||| ||||||||||||| ||||||||| ||| || | Sbjct 9512 TCCGGCTGGGCCTTTCCTTTCTGGGGAGCCGCATGCCCTTCCCTGGGTGTGTCGGTGAAC 9453 Query 67 CAGGACTTTTACTTTGAA 84 || |||||| ||| ||| Sbjct 9452 CATGACTTTCCCTTCGAA 9435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915169148608