Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq1130 508 1e-141
seq1895 87.8 3e-15
>seq1130
Length=5783
Score = 508 bits (562), Expect = 1e-141
Identities = 301/314 (96%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2177 TGGTCCGGCCGGGCCTTTCCTTCTGGGGAGCCGCATGCCCTTCACTGGGTGTGTCGGGGA 2236
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2237 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 2296
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2297 TAGCATGGAATGATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 2356
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2357 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 2416
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2417 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 2476
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 2477 ACGAAAGTTAGGGG 2490
>seq1895
Length=11580
Score = 87.8 bits (96), Expect = 3e-15
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 8 TCCGGCCGGGCCTTTCCTT-CTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66
|||||| |||||||||||| ||||||| ||||||||||||| ||||||||| ||| || |
Sbjct 9512 TCCGGCTGGGCCTTTCCTTTCTGGGGAGCCGCATGCCCTTCCCTGGGTGTGTCGGTGAAC 9453
Query 67 CAGGACTTTTACTTTGAA 84
|| |||||| ||| |||
Sbjct 9452 CATGACTTTCCCTTCGAA 9435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915169148608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |