Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1130 895 0.0 seq841 93.3 2e-16 >seq1130 Length=5783 Score = 895 bits (992), Expect = 0.0 Identities = 611/685 (89%), Gaps = 2/685 (0%) Strand=Plus/Plus Query 1 TACGTGACC-GGTGGCCTAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59 || ||||| |||| | | || |||||||||| ||| |||||||||||||||||||||| Sbjct 3971 TATGTGACTAGGTGCCTTCGCTATGTGAAGCTCTTTCAACGAGTCGAGTTGTTTGGGAAT 4030 Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119 ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 4031 GCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGC 4090 Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 4091 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTG 4150 Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT 239 ||||||||||||||||||||||||||| ||||||||| || |||| ||| ||| | Sbjct 4151 AAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCATGCTGTTGATCATCCGAGTTTT 4210 Query 240 CGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCC 299 ||||||||||| | | ||||||||||||| | | || ||| |||||||||| Sbjct 4211 TACCCGGTGCACTCAATAGTGTTCAGGCCAGCATCGGTTTCGGTGGTTAGATAAAGGCCT 4270 Query 300 CGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGG- 358 ||||||| || | |||||| ||||||||||| |||| |||| || |||| Sbjct 4271 TAGGAATGTAGCTTCTCTCGGGGAGTGTTATAGCCTTCGGTGCAATGTAAGCCTACTGGG 4330 Query 359 ACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGA 418 || |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| | Sbjct 4331 ACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAA 4390 Query 419 ACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAA 478 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 4391 ACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTTAAACCCATGCGCGTAA 4450 Query 479 TGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTC 538 |||||||||||||||||| |||||| | |||||||| ||||||||||||||||||||||| Sbjct 4451 TGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTC 4510 Query 539 GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAA 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4511 GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAA 4570 Query 599 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGA 658 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 4571 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGA 4630 Query 659 TCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||||||||| Sbjct 4631 TCGTCAAATTTGGGTATAGGGGCGA 4655 >seq841 Length=93179 Score = 93.3 bits (102), Expect = 2e-16 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGT 566 |||||||| |||||||||| |||||||||||||| |||| ||||||||||||||||| Sbjct 31035 AGGGTGCATCATCGACCGAATCTGATGTCTTCGGACGGATACGAGTAAGAGCATAGCTGC 30976 Query 567 TGGGACCCGAA 577 || |||||||| Sbjct 30975 TGAGACCCGAA 30965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079927692050