Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq1130 895 0.0
seq841 93.3 2e-16
>seq1130
Length=5783
Score = 895 bits (992), Expect = 0.0
Identities = 611/685 (89%), Gaps = 2/685 (0%)
Strand=Plus/Plus
Query 1 TACGTGACC-GGTGGCCTAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59
|| ||||| |||| | | || |||||||||| ||| ||||||||||||||||||||||
Sbjct 3971 TATGTGACTAGGTGCCTTCGCTATGTGAAGCTCTTTCAACGAGTCGAGTTGTTTGGGAAT 4030
Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119
||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4031 GCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGC 4090
Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 4091 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTG 4150
Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT 239
||||||||||||||||||||||||||| ||||||||| || |||| ||| ||| |
Sbjct 4151 AAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCATGCTGTTGATCATCCGAGTTTT 4210
Query 240 CGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCC 299
||||||||||| | | ||||||||||||| | | || ||| ||||||||||
Sbjct 4211 TACCCGGTGCACTCAATAGTGTTCAGGCCAGCATCGGTTTCGGTGGTTAGATAAAGGCCT 4270
Query 300 CGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGG- 358
||||||| || | |||||| ||||||||||| |||| |||| || ||||
Sbjct 4271 TAGGAATGTAGCTTCTCTCGGGGAGTGTTATAGCCTTCGGTGCAATGTAAGCCTACTGGG 4330
Query 359 ACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGA 418
|| |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 4331 ACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAA 4390
Query 419 ACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAA 478
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 4391 ACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTTAAACCCATGCGCGTAA 4450
Query 479 TGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTC 538
|||||||||||||||||| |||||| | |||||||| |||||||||||||||||||||||
Sbjct 4451 TGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTC 4510
Query 539 GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4511 GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAA 4570
Query 599 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGA 658
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4571 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGA 4630
Query 659 TCGTCAAATTTGGGTATAGGGGCGA 683
|||||||||||||||||||||||||
Sbjct 4631 TCGTCAAATTTGGGTATAGGGGCGA 4655
>seq841
Length=93179
Score = 93.3 bits (102), Expect = 2e-16
Identities = 63/71 (89%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGT 566
|||||||| |||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 31035 AGGGTGCATCATCGACCGAATCTGATGTCTTCGGACGGATACGAGTAAGAGCATAGCTGC 30976
Query 567 TGGGACCCGAA 577
|| ||||||||
Sbjct 30975 TGAGACCCGAA 30965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079927692050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |