Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq2078 284 2e-74
>seq2078
Length=3197
Score = 284 bits (314), Expect = 2e-74
Identities = 233/278 (84%), Gaps = 4/278 (1%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||
Sbjct 1948 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 1891
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1890 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1831
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||| | || |||| | ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1830 GAAAGCGGCGATT-TTTCCCACACATCGTAGTCGGATACGAATAGGCTTCGGCCCTGAAT 1772
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
|||||| || ||||| | | | |||| | | || ||||| || |||||
Sbjct 1771 CTTAGCTGGTTGGCAATTGATCTATAGTTGAAGTCTGTAGTTCT-AGCTGACGTCTTGCA 1713
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||| || ||||| |||||| | |||||||| |||||
Sbjct 1712 ATTTTACAATGCGTGGGGATAGACCCTTTGCATACGAC 1675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819173247744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |