Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1130 861 0.0
seq2854 123 8e-26
>seq1130
Length=5783
Score = 861 bits (954), Expect = 0.0
Identities = 494/504 (98%), Gaps = 1/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2020 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 1961
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 CTCCGTGTCGGAATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1901
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1900 TCTCAGGCTCCCTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 1841
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 1781
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1780 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 1721
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1720 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGAGGTTTTTAGCATGTATTAGCTCTAG 1661
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 1601
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1600 GCCATTCGCAGTTTCACCGTATAG-TTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1542
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 1541 AGACAAGCATATGACTACTGGCAG 1518
>seq2854
Length=25642
Score = 123 bits (136), Expect = 8e-26
Identities = 125/164 (76%), Gaps = 18/164 (11%)
Strand=Plus/Minus
Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC------AAGG 245
|||||||||||||| | || | |||||||| ||||||||||||||||| | ||||
Sbjct 10468 TACCATCGAAAGTTAAGAGAGTAGAAATTTAAATGAACCATCGCCGGCCCAAGCATAAGG 10409
Query 246 CCATGCGATTCGTTAA------GTTATTATGAATCACCAA------GGAGCCCCGAAGGG 293
|||||||||||||||| || || ||||| || || ||||||| ||| |
Sbjct 10408 CCATGCGATTCGTTAAGCGGGGGTGGTTGTGAATTACGAAGGAGTTGGAGCCCTAAAGAG 10349
Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGG 337
| || |||||| ||||||||||||||| ||| |||||||| ||
Sbjct 10348 CATTAGTTTTTCGTCTAATAAATACACCTCTTTCGAAGTCGAGG 10305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510349084416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |