Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2637 309 2e-79 seq481 116 3e-21 >seq2637 Length=17558 Score = 309 bits (342), Expect = 2e-79 Identities = 759/1139 (67%), Gaps = 24/1139 (2%) Strand=Plus/Plus Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 |||| || || ||||||||||| |||| | ||||| || ||||| || ||| ||| Sbjct 7816 AAAGCATCTGCAAGACCTTGAACACCAACGGCAATGGGTCGGTGACGAAAGTTGCTTCGT 7875 Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACC 65926 |||||||| || || |||||||| ||||||||||| || || || || | || || | Sbjct 7876 CTCGCCTCGGGAACTGGGTAGTAGTTGATATCGATGATTTTGTTTAAGTT-CTTGACAAC 7934 Query 65927 -ACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGC 65984 || || || ||| | ||| | || || | ||| | || | || | Sbjct 7935 GACTTGGCAGACCTCGTGGAGCTTGG-CAAAGTCGTA-TGT----GCCGTT-----GTTC 7983 Query 65985 CGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAG 66044 | || || || | || || ||||| || || | |||||||||||| |||||||| | Sbjct 7984 ATGTCAACATAAG--TCGGGAGCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTG 8041 Query 66045 GAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCT 66104 | | | ||||| |||||||| ||||||| ||| || || || || || | |||| Sbjct 8042 GCGAAGAGTACTCCACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCT 8101 Query 66105 GTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAA 66164 || || ||||| || ||||||||||||||||| | |||| | || | |||||||| Sbjct 8102 TCTGGTTGCTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGG 8161 Query 66165 CTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTAC 66224 ||| | ||| | ||||| || |||||| | ||||| | || | | | |||| Sbjct 8162 TTTGAGCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGT-CTTGCGACCCTTG 8220 Query 66225 CTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGA 66283 | | | | ||||| | ||||| || ||||| ||||| | || || | || Sbjct 8221 CCCTCCTTCTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAG 8280 Query 66284 CATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATA 66343 | || |||| | || ||||| || | ||| || | | || || ||||| ||| Sbjct 8281 CCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATG 8340 Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 |||||||| || ||||| | ||| |||||||||||||| || || ||||| ||||| Sbjct 8341 AATAGATCGGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCG 8400 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 || || || |||| ||| ||| |||| || | ||||| |||||||| || |||||||| Sbjct 8401 TGGTTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATA 8460 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 ||||| | || || ||| |||||| ||||| || || | ||| ||||||||| Sbjct 8461 GCGAAAGCACCTGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAG 8520 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCT 66583 || |||||||| || || | ||||| || || || ||||| || ||||| || || Sbjct 8521 ACTCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCA 8580 Query 66584 CGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCA 66643 || || || ||| | || ||||||||||| || || |||| || || ||| Sbjct 8581 GTGGCACGAATTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCA 8640 Query 66644 CAATCGGCC---ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGG 66700 || |||| | || | | |||||||||||| || |||| ||| | ||| Sbjct 8641 CA---GGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGG 8697 Query 66701 TAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGC 66760 |||||||| ||| || | | || || | || | ||||| ||||||| || || Sbjct 8698 AAGCATGAAGAAAGCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGA 8757 Query 66761 GTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCA 66820 || ||||| | || ||||| | ||||| ||||| || |||| || || | || || Sbjct 8758 GTGAAGTACTTGCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCG 8817 Query 66821 TGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTG 66880 || || || | || ||||| | | | |||||| || || | | | | | | Sbjct 8818 TGGATGCCAACCGCCACGCGCATAATCATATGTTGAGGGCGCTCAGCAATCTTGCCATCG 8877 Query 66881 ATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | | | | | || || || || |||||||||| ||||| || ||| ||||| || Sbjct 8878 AGACGGAGGAGATATGATCGCTCAAGGGTCTTGAATCCAAAATATTGGTAGTTGAAGTC 8936 Score = 111 bits (122), Expect = 1e-19 Identities = 315/475 (66%), Gaps = 8/475 (2%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| ||||| | || ||| ||| | || | || ||||||||||| || Sbjct 7092 ATCAACAGTGAATTGGATAGGGGCAGAAGCAGCCATTGTACGGAGGTAGTACATGCCAGT 7151 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGC--ATAATTCGGC 65194 ||| | || ||| || ||| ||||| | || | || |||| || || || Sbjct 7152 CTTCAATCCCAACTTCCAGCCAGCGAAGTGCAT-GCTGGTGATCTTGCCCATGGTT-GGA 7209 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || || || || |||| |||||| ||||||||||| ||||| || || ||| Sbjct 7210 TCCTTCATGTGGATGTTCATCGACTGGGATTGATCGATGTATGCGCCACGGTCGGCTGCC 7269 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTC 65313 || | || ||| ||| || |||||||| |||||||||||||| || | | || Sbjct 7270 ATCTGAACAATAGTTCGTTGAGAGATCTCCCAAACGGTCTTGTACAGAGCTTTG-ATATC 7328 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 | ||| || | ||||| ||||| ||||| | | || || ||||| || ||| Sbjct 7329 AGCTGGGATGTTTGGAATGTTCTGGATGGAACCCCCATCAGCGATGATGCGGTTCTTCAT 7388 Query 65374 CGACTCTGACCACAAACCCAAATCGAT-AAGATGTTGAACCAAGTGACGATTGATGACTT 65432 || ||||| | |||| ||| | ||| || ||| || | | |||| ||| | Sbjct 7389 GTTGTCAGACCAGAGGCCCATATCTACCAAGTCCTTCAAC-AACCAAGGGTTGACGACCT 7447 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||| | || ||||| || || |||||||| ||| || |||||| | | Sbjct 7448 GGAACTCGCCAGCAAGCACACGGCGAGAGTAAATGTTGGAAGTGTATGGCTCAAAGCACT 7507 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 | || ||| ||||| || || ||||||||||| |||||||| | ||| Sbjct 7508 CGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAA 7562 >seq481 Length=22500 Score = 116 bits (128), Expect = 3e-21 Identities = 230/335 (69%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | |||||| | ||| || Sbjct 2766 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATCTG 2707 Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201 || || || | | |||||| | | | || || || || | | |||||| Sbjct 2706 TCTAAGGATCTTCACGACTGGAACAACAGACTCAAT-GA-CGACGAGCGTTACTTCATTT 2649 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || || | || ||||| || || || ||||| |||||||| ||||| | | || | Sbjct 2648 CCCACGTTCTTGCATTCTTCGCTGCATCCGACGGAATCGTCAACGAGAACCTTGTCGAGC 2589 Query 61262 GTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || | || || || | | ||||| || || |||||||| ||||| || Sbjct 2588 GCTTCA-GCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAAATCATG 2530 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 |||||||| ||||||| |||| ||| | | ||||||||||| ||||||| ||||| | Sbjct 2529 ATGGAGAACATCCACTCCGAGACATACTCTCTCCTCATCGATACATACATCAAGGAGCAG 2470 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGAC 61415 || |||| | | ||||| || |||||||| Sbjct 2469 GCTCAACGCACATACCTCTTCAACGCTATCGAGAC 2435 Score = 86.0 bits (94), Expect = 5e-12 Identities = 331/506 (65%), Gaps = 17/506 (3%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGAT-CACCAGTACAACGGCTACATTTGGTGAACGAT 61492 ||| || || ||||| ||| ||||| || | | || | |||| |||| | |||| Sbjct 2360 GAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAA-GTCTACCTTTGCTCAACGTC 2302 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 | | ||||| || | || |||||| | || ||| || || || || | ||||||| Sbjct 2301 TTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCGTCCATCTTTT 2242 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 |||||||||| ||||| || ||| |||| || || ||| ||||||| | || || || | Sbjct 2241 GGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATGAGCTCATCTCCCGTG 2182 Query 61613 ACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCGT 61671 | ||||| | || || || || || || || || | || |||| | Sbjct 2181 ATGAGGGTCTTCACACCGACTTCGCATGCCTT-CTTTTTTCCCACT------TGAAGC-A 2130 Query 61672 CCGTCGGAG-GAGCGTG-TGGGTGAGAT-TGTTC-GTGAGGCGGTAACTATCGAACAGGA 61727 ||| | || ||| | | |||| | || |||||| || || || || || || Sbjct 2129 CCGCCCAAGCAAGCAAGCCGTCCAAGATGTCATCACTGAGGCCGTCACAATTGAGCAAGA 2070 Query 61728 ATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCA 61787 ||| ||||||| ||| | || | || |||||||||| | || ||| ||| Sbjct 2069 ATTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCAAATCTGATGAAGCA 2010 Query 61788 GTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATA 61846 || || || || ||||| || ||||| | ||| |||| ||| || |||| | Sbjct 2009 ATACATCGAGTTCGTTGCTGATCGTCTCCTTCTCGCCCTTGGCAATG-AGAAAGTCTACA 1951 Query 61847 ATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTT 61906 | | |||||||| || |||||||| | || || || | || ||||| || || | Sbjct 1950 AGGTTACCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCT 1891 Query 61907 TCGAGAAACGTGTAGGCGACTATCAA 61932 ||||||| ||||| || ||||| ||| Sbjct 1890 TCGAGAAGCGTGTTGGTGACTACCAA 1865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397551666291440