Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 309 2e-79
seq481 116 3e-21
>seq2637
Length=17558
Score = 309 bits (342), Expect = 2e-79
Identities = 759/1139 (67%), Gaps = 24/1139 (2%)
Strand=Plus/Plus
Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866
|||| || || ||||||||||| |||| | ||||| || ||||| || ||| |||
Sbjct 7816 AAAGCATCTGCAAGACCTTGAACACCAACGGCAATGGGTCGGTGACGAAAGTTGCTTCGT 7875
Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACC 65926
|||||||| || || |||||||| ||||||||||| || || || || | || || |
Sbjct 7876 CTCGCCTCGGGAACTGGGTAGTAGTTGATATCGATGATTTTGTTTAAGTT-CTTGACAAC 7934
Query 65927 -ACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGC 65984
|| || || ||| | ||| | || || | ||| | || | || |
Sbjct 7935 GACTTGGCAGACCTCGTGGAGCTTGG-CAAAGTCGTA-TGT----GCCGTT-----GTTC 7983
Query 65985 CGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAG 66044
| || || || | || || ||||| || || | |||||||||||| |||||||| |
Sbjct 7984 ATGTCAACATAAG--TCGGGAGCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTG 8041
Query 66045 GAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCT 66104
| | | ||||| |||||||| ||||||| ||| || || || || || | ||||
Sbjct 8042 GCGAAGAGTACTCCACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCT 8101
Query 66105 GTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAA 66164
|| || ||||| || ||||||||||||||||| | |||| | || | ||||||||
Sbjct 8102 TCTGGTTGCTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGG 8161
Query 66165 CTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTAC 66224
||| | ||| | ||||| || |||||| | ||||| | || | | | ||||
Sbjct 8162 TTTGAGCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGT-CTTGCGACCCTTG 8220
Query 66225 CTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGA 66283
| | | | ||||| | ||||| || ||||| ||||| | || || | ||
Sbjct 8221 CCCTCCTTCTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAG 8280
Query 66284 CATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATA 66343
| || |||| | || ||||| || | ||| || | | || || ||||| |||
Sbjct 8281 CCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATG 8340
Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403
|||||||| || ||||| | ||| |||||||||||||| || || ||||| |||||
Sbjct 8341 AATAGATCGGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCG 8400
Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463
|| || || |||| ||| ||| |||| || | ||||| |||||||| || ||||||||
Sbjct 8401 TGGTTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATA 8460
Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523
||||| | || || ||| |||||| ||||| || || | ||| |||||||||
Sbjct 8461 GCGAAAGCACCTGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAG 8520
Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCT 66583
|| |||||||| || || | ||||| || || || ||||| || ||||| || ||
Sbjct 8521 ACTCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCA 8580
Query 66584 CGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCA 66643
|| || || ||| | || ||||||||||| || || |||| || || |||
Sbjct 8581 GTGGCACGAATTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCA 8640
Query 66644 CAATCGGCC---ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGG 66700
|| |||| | || | | |||||||||||| || |||| ||| | |||
Sbjct 8641 CA---GGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGG 8697
Query 66701 TAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGC 66760
|||||||| ||| || | | || || | || | ||||| ||||||| || ||
Sbjct 8698 AAGCATGAAGAAAGCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGA 8757
Query 66761 GTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCA 66820
|| ||||| | || ||||| | ||||| ||||| || |||| || || | || ||
Sbjct 8758 GTGAAGTACTTGCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCG 8817
Query 66821 TGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTG 66880
|| || || | || ||||| | | | |||||| || || | | | | | |
Sbjct 8818 TGGATGCCAACCGCCACGCGCATAATCATATGTTGAGGGCGCTCAGCAATCTTGCCATCG 8877
Query 66881 ATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939
| | | | | || || || || |||||||||| ||||| || ||| ||||| ||
Sbjct 8878 AGACGGAGGAGATATGATCGCTCAAGGGTCTTGAATCCAAAATATTGGTAGTTGAAGTC 8936
Score = 111 bits (122), Expect = 1e-19
Identities = 315/475 (66%), Gaps = 8/475 (2%)
Strand=Plus/Plus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||| ||||| | || ||| ||| | || | || ||||||||||| ||
Sbjct 7092 ATCAACAGTGAATTGGATAGGGGCAGAAGCAGCCATTGTACGGAGGTAGTACATGCCAGT 7151
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGC--ATAATTCGGC 65194
||| | || ||| || ||| ||||| | || | || |||| || || ||
Sbjct 7152 CTTCAATCCCAACTTCCAGCCAGCGAAGTGCAT-GCTGGTGATCTTGCCCATGGTT-GGA 7209
Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254
|| || || || |||| |||||| ||||||||||| ||||| || || |||
Sbjct 7210 TCCTTCATGTGGATGTTCATCGACTGGGATTGATCGATGTATGCGCCACGGTCGGCTGCC 7269
Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTC 65313
|| | || ||| ||| || |||||||| |||||||||||||| || | | ||
Sbjct 7270 ATCTGAACAATAGTTCGTTGAGAGATCTCCCAAACGGTCTTGTACAGAGCTTTG-ATATC 7328
Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373
| ||| || | ||||| ||||| ||||| | | || || ||||| || |||
Sbjct 7329 AGCTGGGATGTTTGGAATGTTCTGGATGGAACCCCCATCAGCGATGATGCGGTTCTTCAT 7388
Query 65374 CGACTCTGACCACAAACCCAAATCGAT-AAGATGTTGAACCAAGTGACGATTGATGACTT 65432
|| ||||| | |||| ||| | ||| || ||| || | | |||| ||| |
Sbjct 7389 GTTGTCAGACCAGAGGCCCATATCTACCAAGTCCTTCAAC-AACCAAGGGTTGACGACCT 7447
Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492
|||||||||| | || ||||| || || |||||||| ||| || |||||| | |
Sbjct 7448 GGAACTCGCCAGCAAGCACACGGCGAGAGTAAATGTTGGAAGTGTATGGCTCAAAGCACT 7507
Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547
| || ||| ||||| || || ||||||||||| |||||||| | |||
Sbjct 7508 CGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAA 7562
>seq481
Length=22500
Score = 116 bits (128), Expect = 3e-21
Identities = 230/335 (69%), Gaps = 9/335 (3%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || || || |||||||| | |||||| | ||| ||
Sbjct 2766 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATCTG 2707
Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201
|| || || | | |||||| | | | || || || || | | ||||||
Sbjct 2706 TCTAAGGATCTTCACGACTGGAACAACAGACTCAAT-GA-CGACGAGCGTTACTTCATTT 2649
Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261
|| || | || ||||| || || || ||||| |||||||| ||||| | | || |
Sbjct 2648 CCCACGTTCTTGCATTCTTCGCTGCATCCGACGGAATCGTCAACGAGAACCTTGTCGAGC 2589
Query 61262 GTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320
| ||| || | || || || | | ||||| || || |||||||| ||||| ||
Sbjct 2588 GCTTCA-GCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAAATCATG 2530
Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380
|||||||| ||||||| |||| ||| | | ||||||||||| ||||||| ||||| |
Sbjct 2529 ATGGAGAACATCCACTCCGAGACATACTCTCTCCTCATCGATACATACATCAAGGAGCAG 2470
Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGAC 61415
|| |||| | | ||||| || ||||||||
Sbjct 2469 GCTCAACGCACATACCTCTTCAACGCTATCGAGAC 2435
Score = 86.0 bits (94), Expect = 5e-12
Identities = 331/506 (65%), Gaps = 17/506 (3%)
Strand=Plus/Minus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGAT-CACCAGTACAACGGCTACATTTGGTGAACGAT 61492
||| || || ||||| ||| ||||| || | | || | |||| |||| | ||||
Sbjct 2360 GAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAA-GTCTACCTTTGCTCAACGTC 2302
Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552
| | ||||| || | || |||||| | || ||| || || || || | |||||||
Sbjct 2301 TTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCGTCCATCTTTT 2242
Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612
|||||||||| ||||| || ||| |||| || || ||| ||||||| | || || || |
Sbjct 2241 GGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATGAGCTCATCTCCCGTG 2182
Query 61613 ACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCGT 61671
| ||||| | || || || || || || || || | || |||| |
Sbjct 2181 ATGAGGGTCTTCACACCGACTTCGCATGCCTT-CTTTTTTCCCACT------TGAAGC-A 2130
Query 61672 CCGTCGGAG-GAGCGTG-TGGGTGAGAT-TGTTC-GTGAGGCGGTAACTATCGAACAGGA 61727
||| | || ||| | | |||| | || |||||| || || || || || ||
Sbjct 2129 CCGCCCAAGCAAGCAAGCCGTCCAAGATGTCATCACTGAGGCCGTCACAATTGAGCAAGA 2070
Query 61728 ATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCA 61787
||| ||||||| ||| | || | || |||||||||| | || ||| |||
Sbjct 2069 ATTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCAAATCTGATGAAGCA 2010
Query 61788 GTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATA 61846
|| || || || ||||| || ||||| | ||| |||| ||| || |||| |
Sbjct 2009 ATACATCGAGTTCGTTGCTGATCGTCTCCTTCTCGCCCTTGGCAATG-AGAAAGTCTACA 1951
Query 61847 ATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTT 61906
| | |||||||| || |||||||| | || || || | || ||||| || || |
Sbjct 1950 AGGTTACCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCT 1891
Query 61907 TCGAGAAACGTGTAGGCGACTATCAA 61932
||||||| ||||| || ||||| |||
Sbjct 1890 TCGAGAAGCGTGTTGGTGACTACCAA 1865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397551666291440
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