Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq63 104 9e-17 seq12 86.0 2e-11 >seq63 Length=192606 Score = 104 bits (114), Expect = 9e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| ||||||||||||| | ||||||||||||||||||||||| | ||| | Sbjct 17121 CAATGGTCATTCGAGAGGGAATGGCGTGAGGGTTGATGATGATGTCAGGCGTTACGCCTT 17180 Query 364485 CAGCGGTAAAGGGCATATCTT-CGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | | || |||||||||| | | || | | | | ||| ||||| |||||||| | Sbjct 17181 CTCTCGAGAAAGGCATATCTTCCTGTCGGTAAG-TTACACCGATGGTACCCTTTTGTCCG 17239 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||| ||||||||||| ||||| Sbjct 17240 TGACGAGAGGCAAACTTGTCACCAAT 17265 >seq12 Length=1358207 Score = 86.0 bits (94), Expect = 2e-11 Identities = 147/210 (70%), Gaps = 14/210 (7%) Strand=Plus/Minus Query 159449 TCTGGATACTGGTAAGGACCGTAGACATTGTTACAACGGGTGATGATTACGGGAAGAGAG 159508 ||||||||||||| |||||||||||||||||||| || |||||| | |||||| | Sbjct 325942 TCTGGATACTGGTGAGGACCGTAGACATTGTTACTGCGCACGATGATGATGGGAAGCTTG 325883 Query 159509 AAGGAGAGACGATAAGAACTG-GCCAAGAGTTCTGCTCCTGCCTTGCTGGCCGCATAAGG 159567 ||| |||||| |||| ||| | || ||| | |||||||| || |||||||| Sbjct 325882 AAGCTTTTTTGATAAG-ACTGAACCAGCATCTCAGCTGCCGCCTTGCTTGCTGCATAAGG 325824 Query 159568 GTTAGT--GGGC-ATGAAGATGGAATCGATACTAACGTCATCGT---------TCTCTCC 159615 ||| || |||| | || | ||| |||| | | | |||| || |||| || Sbjct 325823 GTTTGTTGGGGCGAGGATGCTGGTTTCGAGAGCATCTTCATTGTCGGAATTAATCTCACC 325764 Query 159616 CTTAACCTCATCTGTAGAGACGTGAATGAA 159645 | |||||||| || |||| ||| || || Sbjct 325763 GTAGACCTCATCCGTCGAGATGTGGATAAA 325734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884874469847142