Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq177 471 8e-131 seq101 217 3e-54 seq179 109 1e-21 >seq177 Length=65289 Score = 471 bits (522), Expect = 8e-131 Identities = 293/314 (93%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||||| |||||||||||||||| |||| || |||||||||||||||||||| ||||| Sbjct 62205 TGGTCCGACCGGGCCTTTCCTTCTAGGGAACCCCATGCCCTTCACTGGGTGTGTGGGGGA 62264 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 62265 ACTAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 62324 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 62325 TAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 62384 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 62385 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCCGTTGTCAGAGGTGAAATTCTTGG 62444 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 62445 ATTTACGGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 62504 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 62505 ACGAAAGTTAGGGG 62518 >seq101 Length=586485 Score = 217 bits (240), Expect = 3e-54 Identities = 171/204 (84%), Gaps = 13/204 (6%) Strand=Plus/Plus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| ||| Sbjct 177952 ATACATTAGCATGGAATAATAAAATAGGACGT-CGGTTCTATTTTGATGGTTTCTAAGAC 178010 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 ||| ||||||| ||||||| ||||||||||| |||| |||||||||||| || Sbjct 178011 CGCTGTAATGAGTAATAGGCATAGTCGGGGGCATCAG--------TGTCAGAGGTGAGAT 178062 Query 239 TCTTGGATTTATTGAAGACTAA----CTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||||||| ||||||||| ||||||||||||| || ||| ||| ||| |||| Sbjct 178063 TCTTGGATTTATGGAAGACTAACTACCTACTGCGAAAGCATTTGCCACGGAGGTTATCAT 178122 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||| || ||||| ||||| |||| Sbjct 178123 TAATTAGGGAACGGAAGTTGGGGG 178146 >seq179 Length=511321 Score = 109 bits (120), Expect = 1e-21 Identities = 132/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 89 TTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC 148 ||| ||| || |||| | | | | || ||||| ||||| || |||||||||||||| | Sbjct 441852 TTAAAGTATTTAAAGTAAGGTTATACTTGAATATATTAGTATAGAATAATAGAATAGAAA 441793 Query 149 G--TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGG 206 | | ||||| |||| || || |||||||| | ||| | ||||||| ||| ||||| Sbjct 441792 GTATATAGTTCTGTTTTATTAGTCTCTAGGACTACGGTAGTAATTAATAAAGATCGTCGG 441733 Query 207 GGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACT 265 || | ||||| ||| | | ||||| ||||||| ||||||| |||||||| |||| Sbjct 441732 AAGTAGAAATATTCTATTATTAAAGGTGGAATTCTTAGATTTATATAAGACTAATTACT 441674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915195158592