Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27]
529 sequences; 69,308,136 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq177 471 8e-131
seq101 217 3e-54
seq179 109 1e-21
>seq177
Length=65289
Score = 471 bits (522), Expect = 8e-131
Identities = 293/314 (93%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||||||| |||||||||||||||| |||| || |||||||||||||||||||| |||||
Sbjct 62205 TGGTCCGACCGGGCCTTTCCTTCTAGGGAACCCCATGCCCTTCACTGGGTGTGTGGGGGA 62264
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 62265 ACTAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 62324
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 62325 TAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 62384
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 62385 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCCGTTGTCAGAGGTGAAATTCTTGG 62444
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 62445 ATTTACGGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 62504
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 62505 ACGAAAGTTAGGGG 62518
>seq101
Length=586485
Score = 217 bits (240), Expect = 3e-54
Identities = 171/204 (84%), Gaps = 13/204 (6%)
Strand=Plus/Plus
Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178
||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| |||
Sbjct 177952 ATACATTAGCATGGAATAATAAAATAGGACGT-CGGTTCTATTTTGATGGTTTCTAAGAC 178010
Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238
||| ||||||| ||||||| ||||||||||| |||| |||||||||||| ||
Sbjct 178011 CGCTGTAATGAGTAATAGGCATAGTCGGGGGCATCAG--------TGTCAGAGGTGAGAT 178062
Query 239 TCTTGGATTTATTGAAGACTAA----CTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294
|||||||||||| ||||||||| ||||||||||||| || ||| ||| ||| ||||
Sbjct 178063 TCTTGGATTTATGGAAGACTAACTACCTACTGCGAAAGCATTTGCCACGGAGGTTATCAT 178122
Query 295 TAATCAGTGAACGAAAGTTAGGGG 318
|||| || ||||| ||||| ||||
Sbjct 178123 TAATTAGGGAACGGAAGTTGGGGG 178146
>seq179
Length=511321
Score = 109 bits (120), Expect = 1e-21
Identities = 132/179 (74%), Gaps = 2/179 (1%)
Strand=Plus/Minus
Query 89 TTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC 148
||| ||| || |||| | | | | || ||||| ||||| || |||||||||||||| |
Sbjct 441852 TTAAAGTATTTAAAGTAAGGTTATACTTGAATATATTAGTATAGAATAATAGAATAGAAA 441793
Query 149 G--TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGG 206
| | ||||| |||| || || |||||||| | ||| | ||||||| ||| |||||
Sbjct 441792 GTATATAGTTCTGTTTTATTAGTCTCTAGGACTACGGTAGTAATTAATAAAGATCGTCGG 441733
Query 207 GGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACT 265
|| | ||||| ||| | | ||||| ||||||| ||||||| |||||||| ||||
Sbjct 441732 AAGTAGAAATATTCTATTATTAAAGGTGGAATTCTTAGATTTATATAAGACTAATTACT 441674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915195158592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |