Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq177 825 0.0 >seq177 Length=65289 Score = 825 bits (914), Expect = 0.0 Identities = 560/623 (90%), Gaps = 4/623 (1%) Strand=Plus/Plus Query 1 TACGTGACCGGTGGCCTA-GCC-GTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAA 58 || ||||| || ||||| ||| |||| |||||| ||||||||||||||||||||||||| Sbjct 64668 TATGTGACTGGCGGCCTTCGCCTGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAA 64727 Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 64728 TGCAGCTCTAAATGGGAGGTATATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 64787 Query 119 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGT 178 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 64788 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGT 64847 Query 179 GAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCC 237 ||||||||||||||||||||||||||||||||||||||| || || | ||| || || Sbjct 64848 GAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCTGCCGTCGATCATCCTGGGTT 64907 Query 238 CTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGC 297 ||| | ||||||||| | | ||||||||||||||| | | || ||| |||||||||| Sbjct 64908 CTCC-CTGGTGCACTCGGCGGTGGTCAGGCCAGCATCGGTTTCGGTGGTGGGATAAAGGC 64966 Query 298 CCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTG 357 | ||||| || || || |||||| |||||||||||| |||| ||||| ||| || | Sbjct 64967 CTTGGGAACGTAGCTCCTCTCGGGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCGG 65026 Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417 ||| |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 65027 GACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGA 65086 Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477 |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| Sbjct 65087 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTTAAACCCATACGCGTA 65146 Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537 || || ||||||||||||| |||||| | |||||||| |||||||||||||||||||||| Sbjct 65147 ATTAACGTGAACGGAGGTGAGAACCCTTTAGGGTGCATCATCGACCGATCCTGATGTCTT 65206 Query 538 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 65207 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTAA 65266 Query 598 ATAGGGTGAAGCCAGAGGAAACT 620 ||||||||||||||||||||||| Sbjct 65267 ATAGGGTGAAGCCAGAGGAAACT 65289 Score = 318 bits (352), Expect = 2e-84 Identities = 185/191 (97%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 493 GGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552 |||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 52647 GGTGAGAACCCTTTAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 52706 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 52707 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTAAATAGGGTGAAGCCAG 52766 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 52767 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG 52826 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 52827 TATAGGGGCGA 52837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079988652950