Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27]
529 sequences; 69,308,136 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq177 825 0.0
>seq177
Length=65289
Score = 825 bits (914), Expect = 0.0
Identities = 560/623 (90%), Gaps = 4/623 (1%)
Strand=Plus/Plus
Query 1 TACGTGACCGGTGGCCTA-GCC-GTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAA 58
|| ||||| || ||||| ||| |||| |||||| |||||||||||||||||||||||||
Sbjct 64668 TATGTGACTGGCGGCCTTCGCCTGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAA 64727
Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 64728 TGCAGCTCTAAATGGGAGGTATATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 64787
Query 119 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGT 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 64788 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGT 64847
Query 179 GAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCC 237
||||||||||||||||||||||||||||||||||||||| || || | ||| || ||
Sbjct 64848 GAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCTGCCGTCGATCATCCTGGGTT 64907
Query 238 CTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGC 297
||| | ||||||||| | | ||||||||||||||| | | || ||| ||||||||||
Sbjct 64908 CTCC-CTGGTGCACTCGGCGGTGGTCAGGCCAGCATCGGTTTCGGTGGTGGGATAAAGGC 64966
Query 298 CCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTG 357
| ||||| || || || |||||| |||||||||||| |||| ||||| ||| || |
Sbjct 64967 CTTGGGAACGTAGCTCCTCTCGGGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCGG 65026
Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417
||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 65027 GACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGA 65086
Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 65087 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTTAAACCCATACGCGTA 65146
Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537
|| || ||||||||||||| |||||| | |||||||| ||||||||||||||||||||||
Sbjct 65147 ATTAACGTGAACGGAGGTGAGAACCCTTTAGGGTGCATCATCGACCGATCCTGATGTCTT 65206
Query 538 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 65207 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTAA 65266
Query 598 ATAGGGTGAAGCCAGAGGAAACT 620
|||||||||||||||||||||||
Sbjct 65267 ATAGGGTGAAGCCAGAGGAAACT 65289
Score = 318 bits (352), Expect = 2e-84
Identities = 185/191 (97%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 493 GGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552
|||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 52647 GGTGAGAACCCTTTAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 52706
Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 52707 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTAAATAGGGTGAAGCCAG 52766
Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 52767 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGG 52826
Query 673 TATAGGGGCGA 683
|||||||||||
Sbjct 52827 TATAGGGGCGA 52837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079988652950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |