Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27]
529 sequences; 69,308,136 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq177 365 7e-99
seq69 219 7e-55
seq101 154 2e-35
seq113 91.5 2e-16
>seq177
Length=65289
Score = 365 bits (404), Expect = 7e-99
Identities = 236/257 (92%), Gaps = 1/257 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63348 ACTCGTTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 63289
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 63288 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 63230
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
|||| ||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 63229 ACCAGCCAAAGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 63170
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 63169 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 63110
Query 242 AGAGCTATCAATCTGTC 258
|||||| ||||||||||
Sbjct 63109 AGAGCTCTCAATCTGTC 63093
>seq69
Length=257353
Score = 219 bits (242), Expect = 7e-55
Identities = 158/181 (87%), Gaps = 1/181 (1%)
Strand=Plus/Minus
Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131
|||||||||||||| |||| || ||| |||||| |||||||||||| || |||| ||| |
Sbjct 157853 CCTCAAACTTCCATCGGCTCGA-GCCGATAGTCGCTCTAAGAAGCCGGCGACCAGCCAAA 157795
Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191
| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 157794 GCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAAGCAGACAAAT 157735
Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251
|||||||||||||||||||||||||||||||||||||| | | |||||||||||| |||
Sbjct 157734 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAATACCAAGAAAGAGCTCTCA 157675
Query 252 A 252
|
Sbjct 157674 A 157674
>seq101
Length=586485
Score = 154 bits (170), Expect = 2e-35
Identities = 126/153 (82%), Gaps = 4/153 (3%)
Strand=Plus/Minus
Query 106 CTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGT 165
|||||||||||||| |||| || || | | |||| || || | ||||||||
Sbjct 198377 CTCTAAGAAGCCAGTGACCAGCCCAAGCCAA----GCTAACCTGCGAGTAAGGGTCTCGT 198322
Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
|||||||| |||||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 198321 TCGTTATCACAATTAAGCAGACAAATCACTCCACCAACTAAGTACGGCCATGCACTACCA 198262
Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||| | ||||||||||||||| ||||||||||
Sbjct 198261 CCCACAAAATCAAGAAAGAGCTCTCAATCTGTC 198229
>seq113
Length=576732
Score = 91.5 bits (100), Expect = 2e-16
Identities = 52/53 (98%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 8 TGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 513828 TGGCTCCGTCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAG 513776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796795916649
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |