Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq177 365 7e-99 seq69 219 7e-55 seq101 154 2e-35 seq113 91.5 2e-16 >seq177 Length=65289 Score = 365 bits (404), Expect = 7e-99 Identities = 236/257 (92%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63348 ACTCGTTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 63289 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 63288 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 63230 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| ||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 63229 ACCAGCCAAAGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 63170 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 63169 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 63110 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 63109 AGAGCTCTCAATCTGTC 63093 >seq69 Length=257353 Score = 219 bits (242), Expect = 7e-55 Identities = 158/181 (87%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 |||||||||||||| |||| || ||| |||||| |||||||||||| || |||| ||| | Sbjct 157853 CCTCAAACTTCCATCGGCTCGA-GCCGATAGTCGCTCTAAGAAGCCGGCGACCAGCCAAA 157795 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | ||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 157794 GCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAAGCAGACAAAT 157735 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 |||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||| Sbjct 157734 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAATACCAAGAAAGAGCTCTCA 157675 Query 252 A 252 | Sbjct 157674 A 157674 >seq101 Length=586485 Score = 154 bits (170), Expect = 2e-35 Identities = 126/153 (82%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 106 CTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGT 165 |||||||||||||| |||| || || | | |||| || || | |||||||| Sbjct 198377 CTCTAAGAAGCCAGTGACCAGCCCAAGCCAA----GCTAACCTGCGAGTAAGGGTCTCGT 198322 Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 |||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 198321 TCGTTATCACAATTAAGCAGACAAATCACTCCACCAACTAAGTACGGCCATGCACTACCA 198262 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| | ||||||||||||||| |||||||||| Sbjct 198261 CCCACAAAATCAAGAAAGAGCTCTCAATCTGTC 198229 >seq113 Length=576732 Score = 91.5 bits (100), Expect = 2e-16 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 8 TGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 513828 TGGCTCCGTCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAG 513776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796795916649