Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq177 96.9 2e-18 seq517 75.2 7e-12 >seq177 Length=65289 Score = 96.9 bits (106), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||||| |||||| | ||||| || ||||||||| ||||||||||| |||||||||| Sbjct 63541 TCCGAAAGC-CTCACTTAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 63485 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| || |||||||| Sbjct 63484 GGCAGGGACGTAAT-CAGCGCAAGCT 63460 >seq517 Length=261423 Score = 75.2 bits (82), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| | ||||| || ||||| ||| ||||||||||| |||||||||||||||| ||| Sbjct 243032 CTCACTTAACCATT-CAATCGGTTGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGCACG 243089 Query 109 TAATACAACGCAAGC 123 || | ||||| |||| Sbjct 243090 TACT-CAACGTAAGC 243103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300798508220