Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq177 266 3e-69 seq101 127 2e-27 seq179 75.2 1e-11 >seq177 Length=65289 Score = 266 bits (294), Expect = 3e-69 Identities = 173/189 (92%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 62262 GGAACTAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATA 62321 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct 62322 CATTAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 62380 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 62381 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCCGTTGTCAGAGGTGAAATTC 62440 Query 181 TTGGATTTA 189 ||||||||| Sbjct 62441 TTGGATTTA 62449 >seq101 Length=586485 Score = 127 bits (140), Expect = 2e-27 Identities = 109/133 (82%), Gaps = 10/133 (8%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| |||||||||||| |||||||||| ||||||||||||| |||||||| ||| Sbjct 177952 ATACATTAGCATGGAATAATAAAATAGGACGT-CGGTTCTATTTTGATGGTTTCTAAGAC 178010 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || | ||||||| |||| | ||||||||||| |||| ||||| |||||| | Sbjct 178011 CG-CTGTAATGAGTAATAGGCATAGTCGGGGGCATCAG--------TGTCAGAGGTGAGA 178061 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 178062 TTCTTGGATTTAT 178074 >seq179 Length=511321 Score = 75.2 bits (82), Expect = 1e-11 Identities = 102/140 (73%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 53 CTCGAATACATTACCATGGAATAATAGAATAGGACG--TGCGGTTCTATTTTGTAGGTTT 110 || ||||| |||| || |||||||||||||| | | | ||||| |||| | || | Sbjct 441827 CTTGAATATATTAGTATAGAATAATAGAATAGAAAGTATATAGTTCTGTTTTATTAGTCT 441768 Query 111 CTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAA 170 |||||| | | ||| | || |||| ||| ||||| || | ||||| ||| | ||| Sbjct 441767 CTAGGA-CTACGGTAGTAATTAATAAAGATCGTCGGAAGTAGAAATATTCTATTATTAAA 441709 Query 171 GGTGAAATTCTTGGATTTAT 190 |||| ||||||| ||||||| Sbjct 441708 GGTGGAATTCTTAGATTTAT 441689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511997376160