Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27]
529 sequences; 69,308,136 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq177 266 3e-69
seq101 127 2e-27
seq179 75.2 1e-11
>seq177
Length=65289
Score = 266 bits (294), Expect = 3e-69
Identities = 173/189 (92%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 62262 GGAACTAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATA 62321
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||
Sbjct 62322 CATTAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 62380
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||||||||||||| ||||||||| |||||| |||||||||||
Sbjct 62381 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCCGTTGTCAGAGGTGAAATTC 62440
Query 181 TTGGATTTA 189
|||||||||
Sbjct 62441 TTGGATTTA 62449
>seq101
Length=586485
Score = 127 bits (140), Expect = 2e-27
Identities = 109/133 (82%), Gaps = 10/133 (8%)
Strand=Plus/Plus
Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117
|||||||| |||||||||||| |||||||||| ||||||||||||| |||||||| |||
Sbjct 177952 ATACATTAGCATGGAATAATAAAATAGGACGT-CGGTTCTATTTTGATGGTTTCTAAGAC 178010
Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177
|| | ||||||| |||| | ||||||||||| |||| ||||| |||||| |
Sbjct 178011 CG-CTGTAATGAGTAATAGGCATAGTCGGGGGCATCAG--------TGTCAGAGGTGAGA 178061
Query 178 TTCTTGGATTTAT 190
|||||||||||||
Sbjct 178062 TTCTTGGATTTAT 178074
>seq179
Length=511321
Score = 75.2 bits (82), Expect = 1e-11
Identities = 102/140 (73%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 53 CTCGAATACATTACCATGGAATAATAGAATAGGACG--TGCGGTTCTATTTTGTAGGTTT 110
|| ||||| |||| || |||||||||||||| | | | ||||| |||| | || |
Sbjct 441827 CTTGAATATATTAGTATAGAATAATAGAATAGAAAGTATATAGTTCTGTTTTATTAGTCT 441768
Query 111 CTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAA 170
|||||| | | ||| | || |||| ||| ||||| || | ||||| ||| | |||
Sbjct 441767 CTAGGA-CTACGGTAGTAATTAATAAAGATCGTCGGAAGTAGAAATATTCTATTATTAAA 441709
Query 171 GGTGAAATTCTTGGATTTAT 190
|||| ||||||| |||||||
Sbjct 441708 GGTGGAATTCTTAGATTTAT 441689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511997376160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |