Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq177 464 1e-128 seq113 208 1e-51 seq69 145 1e-32 >seq177 Length=65289 Score = 464 bits (514), Expect = 1e-128 Identities = 289/309 (94%), Gaps = 1/309 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 63184 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 63243 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63244 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 63303 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||| Sbjct 63304 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAACGAGTT-TTTTCCTTAACCG 63362 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 63363 AAAGGTTTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 63422 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||| Sbjct 63423 CTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCCTG 63482 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 63483 CCCTTTGTA 63491 >seq113 Length=576732 Score = 208 bits (230), Expect = 1e-51 Identities = 171/206 (83%), Gaps = 13/206 (6%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG-- 183 |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || Sbjct 513776 CTGTGATGCCCTTAGATGTTCTGGGCTGCACGCGCGCTACACTGACGGAGCCAACAAGCT 513835 Query 184 TTCATCACCTTGGCCGGAAGGTCT-GGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 || || || | ||| ||||| | ||||||||| | |||||| |||| ||| Sbjct 513836 TTTTTCCCCCTAACCGAAAGGTTTTGGGTAATCT---------CCGTCGTGTTGGG-ATA 513885 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 | |||||||| |||||||||||||||||||||| |||||||||||| ||||||||| | Sbjct 513886 GGGCATTGCAGTTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTG 513945 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||||||||||||| ||||||| Sbjct 513946 CGCTGATTACGTCCCTGCTCTTTGTA 513971 >seq69 Length=257353 Score = 145 bits (160), Expect = 1e-32 Identities = 89/95 (94%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 157759 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 157818 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGG 114 || |||||||||||| ||||||||||||||||||| Sbjct 157819 AGCGACTATCGGCTCGAGCCGATGGAAGTTTGAGG 157853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947194989312