Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27]
529 sequences; 69,308,136 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq177 464 1e-128
seq113 208 1e-51
seq69 145 1e-32
>seq177
Length=65289
Score = 464 bits (514), Expect = 1e-128
Identities = 289/309 (94%), Gaps = 1/309 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 63184 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 63243
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63244 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 63303
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| ||||||||||||| | |||| |||
Sbjct 63304 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAACGAGTT-TTTTCCTTAACCG 63362
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 63363 AAAGGTTTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 63422
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||
Sbjct 63423 CTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCCTG 63482
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 63483 CCCTTTGTA 63491
>seq113
Length=576732
Score = 208 bits (230), Expect = 1e-51
Identities = 171/206 (83%), Gaps = 13/206 (6%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG-- 183
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 513776 CTGTGATGCCCTTAGATGTTCTGGGCTGCACGCGCGCTACACTGACGGAGCCAACAAGCT 513835
Query 184 TTCATCACCTTGGCCGGAAGGTCT-GGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242
|| || || | ||| ||||| | ||||||||| | |||||| |||| |||
Sbjct 513836 TTTTTCCCCCTAACCGAAAGGTTTTGGGTAATCT---------CCGTCGTGTTGGG-ATA 513885
Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302
| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct 513886 GGGCATTGCAGTTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTG 513945
Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328
|| ||||||||||||||| |||||||
Sbjct 513946 CGCTGATTACGTCCCTGCTCTTTGTA 513971
>seq69
Length=257353
Score = 145 bits (160), Expect = 1e-32
Identities = 89/95 (94%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 157759 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 157818
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGG 114
|| |||||||||||| |||||||||||||||||||
Sbjct 157819 AGCGACTATCGGCTCGAGCCGATGGAAGTTTGAGG 157853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947194989312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |