Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq177 619 4e-175 seq101 154 5e-35 seq1 111 5e-22 >seq177 Length=65289 Score = 619 bits (686), Expect = 4e-175 Identities = 401/436 (92%), Gaps = 5/436 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55203 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 55144 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 55143 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 55084 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | ||| |||||||||||| ||||| Sbjct 55083 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 55024 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| |||| |||||||||||||||| |||| | |||||||| || Sbjct 55023 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCGTTA---GCTCCCACCTA 54967 Query 247 TTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 54966 TTCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 54908 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 54907 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 54848 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 54847 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 54788 Query 426 TTGGCTACCTTAAGAG 441 |||||||||||||||| Sbjct 54787 TTGGCTACCTTAAGAG 54772 Score = 178 bits (196), Expect = 4e-42 Identities = 101/103 (98%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 54457 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 54398 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 54397 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 54355 >seq101 Length=586485 Score = 154 bits (170), Expect = 5e-35 Identities = 88/90 (98%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 201538 AGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 201479 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||||||||||||||||||||||| ||||| Sbjct 201478 TAGTAGATAGGGACAGTGGGAATCGCGTTA 201449 Score = 96.9 bits (106), Expect = 1e-17 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 200945 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGAC 200890 Score = 84.2 bits (92), Expect = 7e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 200835 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 200787 Score = 80.6 bits (88), Expect = 9e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 117012 ACATTCAGAGCACTGGGCAGATATCACATTGCGTCAACACCACTTTCTG 116964 Score = 77.0 bits (84), Expect = 1e-11 Identities = 52/57 (91%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 441 GAGTCATAGTTAC-TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||| ||||||||| |||| ||||||||||||||||||||||||| |||| ||||||| Sbjct 117125 GAGCCATAGTTACCTCCCACCGTTTACCCGCGCTTGGTTGAATTACTTCCCTTTGAC 117069 Score = 77.0 bits (84), Expect = 1e-11 Identities = 97/129 (75%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 171 AGTTCCGCTTCATTGATTAAGTaaaaaaa-CGATAAGGGTAGTGGTATTTCACTTGCGCC 229 ||||||| | | ||| |||||||||||| | |||| |||| |||||| |||||| | Sbjct 201975 AGTTCCGATCTACTGAATAAGTAAAAAAAACCATAAAGGTAACGGTATT-CACTTGGGAG 201917 Query 230 GAAACGGCTCCCACTTATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288 | |||||||| ||||||||| ||| | | ||| ||| |||| || |||||||| Sbjct 201916 TTA---GCTCCCACCTATTCTACACCCTTTTATGTCTTTTTACAACGTTAAACTAGAGTT 201860 Query 289 AAGCTCAAC 297 ||||| ||| Sbjct 201859 AAGCTTAAC 201851 >seq1 Length=1016359 Score = 111 bits (122), Expect = 5e-22 Identities = 89/105 (85%), Gaps = 7/105 (7%) Strand=Plus/Minus Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC--TTCACTTTGACA-T 498 ||||| |||||||||| |||| |||| ||||||||||| | | |||||| ||| | Sbjct 132904 AGTCAAAGTTACTCCCATCGTTCACCC----TTGGTTGAATTACACTCCACTTTAACAAT 132849 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 132848 TCAAAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 132804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635191349792