Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27]
529 sequences; 69,308,136 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq177 619 4e-175
seq101 154 5e-35
seq1 111 5e-22
>seq177
Length=65289
Score = 619 bits (686), Expect = 4e-175
Identities = 401/436 (92%), Gaps = 5/436 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55203 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 55144
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 55143 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 55084
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||| || |||| ||| | ||| |||||||||||| |||||
Sbjct 55083 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 55024
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| |||| |||||||||||||||| |||| | |||||||| ||
Sbjct 55023 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCGTTA---GCTCCCACCTA 54967
Query 247 TTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||||||||| ||| | ||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 54966 TTCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 54908
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 54907 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 54848
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54847 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 54788
Query 426 TTGGCTACCTTAAGAG 441
||||||||||||||||
Sbjct 54787 TTGGCTACCTTAAGAG 54772
Score = 178 bits (196), Expect = 4e-42
Identities = 101/103 (98%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 54457 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 54398
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 54397 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 54355
>seq101
Length=586485
Score = 154 bits (170), Expect = 5e-35
Identities = 88/90 (98%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 201538 AGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 201479
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTA 387
|||||||||||||||||||||||| |||||
Sbjct 201478 TAGTAGATAGGGACAGTGGGAATCGCGTTA 201449
Score = 96.9 bits (106), Expect = 1e-17
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 200945 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGAC 200890
Score = 84.2 bits (92), Expect = 7e-14
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 200835 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 200787
Score = 80.6 bits (88), Expect = 9e-13
Identities = 47/49 (96%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 117012 ACATTCAGAGCACTGGGCAGATATCACATTGCGTCAACACCACTTTCTG 116964
Score = 77.0 bits (84), Expect = 1e-11
Identities = 52/57 (91%), Gaps = 1/57 (2%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTAC-TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496
||| ||||||||| |||| ||||||||||||||||||||||||| |||| |||||||
Sbjct 117125 GAGCCATAGTTACCTCCCACCGTTTACCCGCGCTTGGTTGAATTACTTCCCTTTGAC 117069
Score = 77.0 bits (84), Expect = 1e-11
Identities = 97/129 (75%), Gaps = 6/129 (5%)
Strand=Plus/Minus
Query 171 AGTTCCGCTTCATTGATTAAGTaaaaaaa-CGATAAGGGTAGTGGTATTTCACTTGCGCC 229
||||||| | | ||| |||||||||||| | |||| |||| |||||| |||||| |
Sbjct 201975 AGTTCCGATCTACTGAATAAGTAAAAAAAACCATAAAGGTAACGGTATT-CACTTGGGAG 201917
Query 230 GAAACGGCTCCCACTTATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288
| |||||||| ||||||||| ||| | | ||| ||| |||| || ||||||||
Sbjct 201916 TTA---GCTCCCACCTATTCTACACCCTTTTATGTCTTTTTACAACGTTAAACTAGAGTT 201860
Query 289 AAGCTCAAC 297
||||| |||
Sbjct 201859 AAGCTTAAC 201851
>seq1
Length=1016359
Score = 111 bits (122), Expect = 5e-22
Identities = 89/105 (85%), Gaps = 7/105 (7%)
Strand=Plus/Minus
Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC--TTCACTTTGACA-T 498
||||| |||||||||| |||| |||| ||||||||||| | | |||||| ||| |
Sbjct 132904 AGTCAAAGTTACTCCCATCGTTCACCC----TTGGTTGAATTACACTCCACTTTAACAAT 132849
Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 132848 TCAAAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 132804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635191349792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |