Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq177 865 0.0 seq93 417 2e-114 seq101 84.2 7e-14 >seq177 Length=65289 Score = 865 bits (958), Expect = 0.0 Identities = 494/504 (98%), Gaps = 0/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62048 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 61989 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61988 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 61929 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 61928 TCTCAGGCTCCCTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 61869 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61868 GACCACTACTCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 61809 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61808 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 61749 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61748 TTTTTATCTAATAAATACACCCCTTCCGAAGTTGGGGTTTTTAGCATGTATTAGCTCTAG 61689 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 61688 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 61629 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61628 GCCATTCGCAGTTTCACCGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 61569 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 61568 AGACAAGCATATGACTACTGGCAG 61545 >seq93 Length=117840 Score = 417 bits (462), Expect = 2e-114 Identities = 281/311 (90%), Gaps = 5/311 (2%) Strand=Plus/Plus Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 ||||||||| ||||||| ||||| |||||||| | |||||||||||| ||||||||||| Sbjct 46459 TCCCCGTTATCCGTTGAAACCATAGTAGGCCAAAACCCTACCATCGAA-GTTGATAGGGC 46517 Query 214 AGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT 273 ||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||| Sbjct 46518 AGAAATTTGAATGAACCTTCGCCTGCACAAGGCCATGCGATTCGTTAAGTTAT---GAAT 46574 Query 274 CACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTC 333 ||||||||||||||||||| | |||||||||||| ||||||| ||||||||||| ||||| Sbjct 46575 CACCAAGGAGCCCCGAAGG-CATTGGTTTTTTATTTAATAAACACACCCCTTCCAAAGTC 46633 Query 334 GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 ||| |||||||||| |||||||||||||||||||||||| ||||| | ||||||||||| Sbjct 46634 GGGATTTTTAGCATATATTAGCTCTAGAATTACCACGGTCATCCAGGCTGTAAGGTACTA 46693 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT 453 |||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||| Sbjct 46694 TCAAATAATTGATAACTGATTTAATGAGCCATTAGCAGTCTCACCGTATAGATTGCTTAT 46753 Query 454 ACTTAGACATG 464 ||||| ||||| Sbjct 46754 ACTTAAACATG 46764 >seq101 Length=586485 Score = 84.2 bits (92), Expect = 7e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG 211 |||||| |||||| ||| | |||||||||||||| ||| || ||||||||||||||| Sbjct 218187 ATTCCCTGTTACCTGTTAAAACCATGGTAGGCCATTATTTTATCATCGAAAGTTGATAAT 218246 Query 212 GCAGAAATTTG 222 ||||||||||| Sbjct 218247 GCAGAAATTTG 218257 Score = 80.6 bits (88), Expect = 8e-13 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTT 47 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 217905 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTT 217948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510392009984