Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27]
529 sequences; 69,308,136 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq177 865 0.0
seq93 417 2e-114
seq101 84.2 7e-14
>seq177
Length=65289
Score = 865 bits (958), Expect = 0.0
Identities = 494/504 (98%), Gaps = 0/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62048 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 61989
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61988 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 61929
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 61928 TCTCAGGCTCCCTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 61869
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61868 GACCACTACTCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 61809
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61808 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 61749
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61748 TTTTTATCTAATAAATACACCCCTTCCGAAGTTGGGGTTTTTAGCATGTATTAGCTCTAG 61689
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61688 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 61629
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61628 GCCATTCGCAGTTTCACCGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 61569
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 61568 AGACAAGCATATGACTACTGGCAG 61545
>seq93
Length=117840
Score = 417 bits (462), Expect = 2e-114
Identities = 281/311 (90%), Gaps = 5/311 (2%)
Strand=Plus/Plus
Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213
||||||||| ||||||| ||||| |||||||| | |||||||||||| |||||||||||
Sbjct 46459 TCCCCGTTATCCGTTGAAACCATAGTAGGCCAAAACCCTACCATCGAA-GTTGATAGGGC 46517
Query 214 AGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT 273
||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 46518 AGAAATTTGAATGAACCTTCGCCTGCACAAGGCCATGCGATTCGTTAAGTTAT---GAAT 46574
Query 274 CACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTC 333
||||||||||||||||||| | |||||||||||| ||||||| ||||||||||| |||||
Sbjct 46575 CACCAAGGAGCCCCGAAGG-CATTGGTTTTTTATTTAATAAACACACCCCTTCCAAAGTC 46633
Query 334 GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393
||| |||||||||| |||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 46634 GGGATTTTTAGCATATATTAGCTCTAGAATTACCACGGTCATCCAGGCTGTAAGGTACTA 46693
Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT 453
|||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct 46694 TCAAATAATTGATAACTGATTTAATGAGCCATTAGCAGTCTCACCGTATAGATTGCTTAT 46753
Query 454 ACTTAGACATG 464
||||| |||||
Sbjct 46754 ACTTAAACATG 46764
>seq101
Length=586485
Score = 84.2 bits (92), Expect = 7e-14
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG 211
|||||| |||||| ||| | |||||||||||||| ||| || |||||||||||||||
Sbjct 218187 ATTCCCTGTTACCTGTTAAAACCATGGTAGGCCATTATTTTATCATCGAAAGTTGATAAT 218246
Query 212 GCAGAAATTTG 222
|||||||||||
Sbjct 218247 GCAGAAATTTG 218257
Score = 80.6 bits (88), Expect = 8e-13
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTT 47
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217905 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTT 217948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510392009984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |