Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq929 664 0.0 >seq929 Length=8916 Score = 664 bits (736), Expect = 0.0 Identities = 554/669 (83%), Gaps = 24/669 (4%) Strand=Plus/Minus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||||||| ||||||||||| |||||||||||| ||||||||||||||||| || |||| Sbjct 3380 AGCTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATCTCTT 3321 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3320 CTAAAGCTAAATATAGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 3261 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 3260 AGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTATGAC 3201 Query 208 CAGACTTG---CCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-C 263 |||||||| | |||||| | | |||| ||| | | |||| | | | || | Sbjct 3200 CAGACTTGTTTCTGGCAGTTTCGTTA---GCCCTCGGGCTGATTTACTC-TGTCCAGTAC 3145 Query 264 AGGCCAGCATCAGCTCG--GGCGGTCGGATAAAGGCCCCGGGAATGTGG---CCCCCTTC 318 ||||||||||||| | | | ||| ||| |||||| | ||||| || | |||||||| Sbjct 3144 AGGCCAGCATCAGTTTGTTGTCGG--GGAGAAAGGCTCTGGGAACGTAGCTCCCCCCTTC 3087 Query 319 ----GGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTC 374 |||| |||||||||||| | ||| | || | |||||||| ||||||| Sbjct 3086 TGGGGGGGAGTGTTATAGCCCTCTGCATAATACCCTTCGGC-AGACTGAGGACCGCGCTT 3028 Query 375 CGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGT 434 |||| ||||||||||||||||||| | |||| ||||||||| ||||||||||||||||| Sbjct 3027 CGGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGT 2968 Query 435 CTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGG 494 | | | | | ||||||||||||||||| |||||| |||||||||||||||||||| ||| Sbjct 2967 CAACCTTATGTGCGAGTGTTTGGGTGTAAAACCCCAGCGCGTAATGAAAGTGAACGTAGG 2908 Query 495 TGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAA 554 || || | || ||| ||||||||||| ||||||| ||||||||||||||||||| Sbjct 2907 TGAGA----GCTTCGGCGCATCATCGACCGATTCTGATGTTTTCGGATGGATTTGAGTAA 2852 Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | | | |||||||||||| |||||||||||| || ||||||||||||||||| Sbjct 2851 GAGCACACAGGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATAGGGTGAAGCCAGAG 2792 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || | | Sbjct 2791 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGAGCA 2732 Query 675 TAGGGGCGA 683 | ||||||| Sbjct 2731 TGGGGGCGA 2723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079969862750