Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq539 237 1e-57 seq431 179 3e-40 >seq539 Length=40911 Score = 237 bits (262), Expect = 1e-57 Identities = 631/961 (66%), Gaps = 10/961 (1%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 |||||||| |||||||| |||||||| ||||| | ||||||||| || |||||||| | Sbjct 17064 GGAAGGGCCAGAGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATA 17123 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || |||||||| || || ||| ||||| || | ||| | ||||| |||||||| Sbjct 17124 ATCTCAGTGCACAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 17183 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| || ||||| | |||| | || |||| |||||| |||| ||| | ||| Sbjct 17184 TTGCAATGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATG 17243 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCAC---CGTACGTACCGC--CCTACCTTTGCGTTCGT 66236 || | ||| || | ||||| || ||| || ||||| || |||| |||| Sbjct 17244 GCATACCACAGCTTCTGGGCCTTGACAACCGTGCG-ACCGCGACCCTCCTTC----TCGT 17298 Query 66237 AATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGT 66296 | | ||| || || || || ||| || | || | || | || || | | Sbjct 17299 ACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCAT 17358 Query 66297 GTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTA 66356 || ||||| || | ||| || ||| | || ||||| ||| || | || | Sbjct 17359 TGGGGCACATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGA 17418 Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA 66416 |||| ||||| |||| || || || || || || || | ||||| || ||||||| Sbjct 17419 TCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCA 17478 Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476 ||||||||||||| |||| || ||||||||||| || ||||| ||||| || | || Sbjct 17479 AGTCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAG 17538 Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536 || ||| ||||| ||||| || || || || |||||||| ||||| | ||| | Sbjct 17539 GTCGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGG 17598 Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596 | |||| ||||| || | || || || || | ||| || || || || ||| Sbjct 17599 GAACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATAC 17658 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656 ||| ||||| ||||| ||||| || ||| |||| || || |||||| | | Sbjct 17659 GGTGGACATTGAGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 17718 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 | | | ||||| || ||| |||| | || ||| | ||| |||| ||| | | Sbjct 17719 TATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACT 17778 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | | | ||| || | || ||||| || |||| ||||| || ||| | | || | Sbjct 17779 GAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGG 17838 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836 |||| | ||||| || || | ||| || | || || || ||| || | ||| Sbjct 17839 ACATAAAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCAAATACCCACAGCAA 17898 Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896 ||||| | | || || || ||||| || | | | | | || | || || ||| | Sbjct 17899 CACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAAG 17958 Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGG 66956 | || || || ||||| | ||||||||| ||| ||||| || | | | |||||||| Sbjct 17959 AACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGG 18018 Query 66957 C 66957 | Sbjct 18019 C 18019 >seq431 Length=155802 Score = 179 bits (198), Expect = 3e-40 Identities = 557/852 (65%), Gaps = 14/852 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | || ||| | ||| | Sbjct 43634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAAGAGATTGATCTC 43693 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | ||| | | | || | || || | ||||| Sbjct 43694 TCCAAGGATCTCCACGACTGGAACAACCGTCTGAACAAG-GACGAGCAGTACTTCATCTC 43752 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || |||||||| || || || || |||||||| || || | | || || Sbjct 43753 CCACATTCTCGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAACCTCGTTGAGCG 43812 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | |||||||| | | ||||| || || |||||||| |||||||| || Sbjct 43813 CTTCTCAGGCGAGGTGCAGATTCCCGAGGCCCGGTGCTTCTACGGTTTCCAGATCATGAT 43872 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| || |||| || || | || | || || || || ||||||| ||||| | Sbjct 43873 GGAAAACATCCATTCTGAAACCTATTCGCTGCTAATTGACACCTACATCAAGGAGCCCTC 43932 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | || | | ||||||||||| || || || || | || || || || Sbjct 43933 GCAGCGCACATACCTATTCAATGCCATTGACACTATTCCCTGCATCCGTCGCAAGGCCGA 43992 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGG--CTACATTTGGTGAACGATTGCTGGCA 61500 ||||| | || ||||||||| |||| | |||| |||| | || | | || Sbjct 43993 CTGGGCTCTGAAGTGGATCACCG--ACAAGGAGTCTACGTTTGCCCAGCGCCTAGTTGCC 44050 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | |||||||| | |||||| || | || ||| | ||||| ||| || Sbjct 44051 TTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTCTGGCTGCGC 44110 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || ||||| || ||||| |||||||||||| || ||| | || || || ||||||||| Sbjct 44111 AAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGTGACGAGGGC 44170 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 |||| || |||||| |||| ||| ||| | || || || || || Sbjct 44171 CTGCACACCGACTTTGCTTGCCTGCTGTTC--TCGC-ACCTAAACAACCGCCCCAGCAAG 44227 Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGAC 61740 || | ||| |||| | ||| || || ||||| |||| || ||||| || Sbjct 44228 GACCTAGTGCAAAAGATCATCACTGATGCCGTTGTGATCGAGAAGGAGTTCCTGACCGAG 44287 Query 61741 GCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTT 61800 ||| | ||| | || | || ||||| | || ||| |||||| ||||| ||| Sbjct 44288 GCTCTTCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAGTTT 44347 Query 61801 GTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCC 61859 ||||| ||||| ||| | || | | | || | ||| || | || | | | |||||| Sbjct 44348 GTTGCGGACCGCCTGCTTGTTGCTCTAGGCAACGAAAAGG-TGTACCGTGCCACAAACCC 44406 Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919 || || |||||||| | || ||||| | |||||||| || || || ||||| ||||| Sbjct 44407 CTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGT 44466 Query 61920 AGGCGACTATCA 61931 || || || || Sbjct 44467 CGGTGATTACCA 44478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561192269200