Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq60 663 0.0 >seq60 Length=8097 Score = 663 bits (734), Expect = 0.0 Identities = 553/668 (83%), Gaps = 23/668 (3%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||||||| ||||||||||| |||||||||||| ||||||||||||||||| || |||| Sbjct 4881 AGCTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATCTCTT 4940 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 4941 CTAAAGCTAAATATAGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 5000 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 5001 AGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTATGAC 5060 Query 208 CAGACTTG---CCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-C 263 |||||||| | |||||| | | ||| ||| | | ||||| | | || | Sbjct 5061 CAGACTTGTTTCTGGCAGTTTCGTTA---GCCTTCGGGCTGATTTACTCTG-TCCAGTAC 5116 Query 264 AGGCCAGCATCAGCTCGGGCGGTCGG--ATAAAGGCCCCGGGAATGTGGC---CCCCTTC 318 ||||||||||||| | | | ||||| | |||||| | ||||| || || ||||||| Sbjct 5117 AGGCCAGCATCAGTTTG--CTGTCGGGGAGAAAGGCTCTGGGAACGTAGCTCCCCCCTTC 5174 Query 319 GGGGGG---TGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCC 375 ||||| ||||||||||| | ||| | || | | ||||||| ||||||| | Sbjct 5175 TGGGGGGAGTGTTATAGCCCTCTGCATAATACCCTTCGGCAG-ACTGAGGACCGCGCTTC 5233 Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435 ||| ||||||||||||||||||| | |||| ||||||||| |||||||||||||||||| Sbjct 5234 GGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTC 5293 Query 436 TAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT 495 | | | | ||||||||||||||||| |||||| |||||||||||||||||||| |||| Sbjct 5294 AACCTTATGTGCGAGTGTTTGGGTGTAAAACCCCAGCGCGTAATGAAAGTGAACGTAGGT 5353 Query 496 GGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 555 | || | || ||| ||||||||||| ||||||| |||||||||||||||||||| Sbjct 5354 GAGAGCTTC----GGCGCATCATCGACCGATTCTGATGTTTTCGGATGGATTTGAGTAAG 5409 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| | | | |||||||||||| |||||||||||| || |||||||||||||||||| Sbjct 5410 AGCACACAGGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATAGGGTGAAGCCAGAGG 5469 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 |||||||||||||||||||||||||||||| ||||||||||||||||||||| || | || Sbjct 5470 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGAGCAT 5529 Query 676 AGGGGCGA 683 ||||||| Sbjct 5530 GGGGGCGA 5537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079979429450