Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq209 221 1e-52 seq598 217 1e-51 seq281 82.4 6e-11 >seq209 Length=70751 Score = 221 bits (244), Expect = 1e-52 Identities = 562/850 (66%), Gaps = 10/850 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||||||||| | |||||| | ||| || Sbjct 41972 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 41913 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 || || || | | |||||| | ||| | | | || || | ||||| Sbjct 41912 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 41853 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || | | || |||||||| || || || || |||||||| || ||| | | || || Sbjct 41852 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCGC 41793 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | |||||||| | | ||||| || || ||||| || |||||||| ||| Sbjct 41792 TTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTATGGTTTCCAGATCATGATG 41733 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || || ||||||| || | ||| | || || || || ||||||| ||||| || Sbjct 41732 GAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCCTCG 41673 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 |||| | ||||||||||||| || || || || | || || || || Sbjct 41672 CAACGCACATACCTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGCCGAC 41613 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| | || ||||||||| |||| | | || |||| | || | | || | Sbjct 41612 TGGGCTCTGAAGTGGATCACC--GACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTGCCT 41555 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | |||||||| | |||||| || | || ||| | ||||| ||| || | Sbjct 41554 TTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTGCGCA 41495 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| || ||||| |||||||||||| || ||| | || || || || |||||| Sbjct 41494 AGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAGGGCC 41435 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681 |||| || |||||| |||| ||| ||| ||||| || || || ||| Sbjct 41434 TGCACACCGACTTTGCTTGCCTGCTGTTC--TCGC-ATCTGAACAACCGCCCCAGCAAGG 41378 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 | | |||| |||| | ||| || || ||||| |||| || ||||| || | Sbjct 41377 ACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGG 41318 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 || ||||| | || | || ||||| || || ||| |||||| ||||| |||| Sbjct 41317 CTCTGCCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAGCAGTACATTGAGTTTG 41258 Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCAT 61861 |||| ||||| ||| | || | | | || | || | | || | | | |||||| | Sbjct 41257 TTGCTGACCGCCTGCTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCCT 41198 Query 61862 TTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAG 61921 | || |||||||| | || ||||| | |||||||| || || |||||||| ||||| | Sbjct 41197 TCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTCGAGAAGCGTGTCG 41138 Query 61922 GCGACTATCA 61931 ||||||| || Sbjct 41137 GCGACTACCA 41128 >seq598 Length=260485 Score = 217 bits (240), Expect = 1e-51 Identities = 616/943 (65%), Gaps = 10/943 (1%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 |||||||| |||||||| |||||||| ||||| | ||| ||||| || ||||||| | Sbjct 23356 GGAAGGGCTAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATA 23297 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || |||||||| || | ||| ||||| || | ||| | ||||| |||||||| Sbjct 23296 ATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 23237 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| || ||||| | ||| | || |||| |||||| || | ||| | ||| Sbjct 23236 TTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATG 23177 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCAC---CGTACGTACCGC--CCTACCTTTGCGTTCGT 66236 || | ||| || | ||||| || | | || ||||| || |||| |||| Sbjct 23176 GCATACCACAGTTTCTGGGCCTTGACAACCATGCG-ACCGCGACCCTCCTTC----TCGT 23122 Query 66237 AATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGT 66296 | | ||| || || || || ||| || | || | || | || || | | Sbjct 23121 ACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCAT 23062 Query 66297 GTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTA 66356 || ||||| || | ||| || ||| || || ||||| ||| || | || | Sbjct 23061 TGGGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGA 23002 Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA 66416 |||| ||||| |||| || || || || || || || | ||||| || ||||| | Sbjct 23001 TCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTA 22942 Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476 ||||||||||||| |||| || ||||||||||| || || || ||||| || | || Sbjct 22941 AGTCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAG 22882 Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536 || ||| ||||| ||||| || || || ||| |||||||| ||||| | ||| | Sbjct 22881 GTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGG 22822 Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596 | |||| ||||| || | || || ||||| | ||| || || || || ||| Sbjct 22821 GAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATAC 22762 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656 ||||||||| ||||| |||||||| ||| |||| || || |||||| | | Sbjct 22761 GGTGAACATTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 22702 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 | | | ||||| || ||| |||| |||| ||| | ||| | |||||| | | Sbjct 22701 TATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACT 22642 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | | | ||| || |||| ||||| || |||| ||||| || ||| | | || || Sbjct 22641 GAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAG 22582 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836 |||| ||||| || || | ||| ||| | || || || ||| || | ||| Sbjct 22581 ACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAAATACCCACAGCAA 22522 Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896 ||||| | | || || || || || || | | | | | | | | || ||| | Sbjct 22521 CACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTACG 22462 Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | || || || ||||| | ||||||||| ||| ||||| || Sbjct 22461 AACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTC 22419 >seq281 Length=219731 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 9159 TACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACGGACTATACG 9218 ||||| || |||||||| |||||||| || ||| | ||| | || ||||||||| Sbjct 25432 TACGGCTTTCAGTGGCGCCATTTCGGAGCCGAGTATGTGGATGCCAAGACAGACTATACG 25373 Query 9219 GGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATATGAGCCGAGTA-- 9276 || |||||||| |||||| |||| || || || || | ||| | | || ||| Sbjct 25372 GGTCAAGGTGTTGATCAGCTGGCTGAAGTCATCCA-CAAACTCAAGACCAACC-CGTACG 25315 Query 9277 GTCGACGCATGATTATGACTGCCTGGAATCCGAACGATTTGGACAAGATGGTATTGCCGC 9336 ||| || || |||||||| || ||||| || |||||| | ||||||| |||| | Sbjct 25314 ATCGGCGTATCATTATGACCGCTTGGAACCCTGCGGATTTGAAGAAGATGGCGCTGCCAC 25255 Query 9337 CATGCCATATG 9347 | ||||| ||| Sbjct 25254 CGTGCCACATG 25244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563353299760