Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2 627 4e-177 >seq2 Length=187415 Score = 627 bits (694), Expect = 4e-177 Identities = 542/663 (82%), Gaps = 19/663 (3%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||| Sbjct 184214 AGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATCTCTT 184273 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 184274 CTAAAGCTAAATATAGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 184333 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 184334 AGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTATGAC 184393 Query 208 CAGACTTGCCCG---CAGTTGCTCAACCGGCCCCTCGGCCGG-TGCACTCTTCTGCGGTC 263 |||||||| | ||||| | |||| | | | ||||| | | | Sbjct 184394 CAGACTTGTCTCTATCAGTTTTGGTAGTTT----TCGGACTGCTTTACTCTGTTA-GTAC 184448 Query 264 AGGCCAGCATCAGCTCG--GGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 |||||| |||||| | | | || ||| |||||| ||||||||||| || |||| | Sbjct 184449 AGGCCAACATCAGTTTGTTGTTGG--GGAGAAAGGCTTAGGGAATGTGGCTCCTTTCGTG 184506 Query 322 GG-GTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTA 380 || |||||||||||| | ||| | || | | ||||||| ||||||| |||| | Sbjct 184507 GGAGTGTTATAGCCCTTTGCATAATACCCTTCGGCAG-ACTGAGGACCGCGCTTCGGCAA 184565 Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||| |||||||||||| | |||| ||||||||| |||||||||||||||||| | | Sbjct 184566 GGATGTTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACCT 184625 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAA 500 | | ||| ||||||||||||| |||||| |||||||||||| ||||||| ||||| || Sbjct 184626 TATGTGCAAGTGTTTGGGTGTAAAACCCCAGCGCGTAATGAACGTGAACGTAGGTGAGAG 184685 Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 560 | || ||| ||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 184686 CTTC----GGCGCATCATCGACCGATTCTGATGTTCTCGGATGGATTTGAGTAAGAGCAC 184741 Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 | | | |||||||||||| |||||||||||| || ||||||||||||||||||||||| Sbjct 184742 ACAGGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATAGGGTGAAGCCAGAGGAAACT 184801 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||||||||||||||||||||| ||||||||||||||||||||| || | || |||| Sbjct 184802 CTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGAGCATGGGGG 184861 Query 681 CGA 683 ||| Sbjct 184862 CGA 184864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079973037350