Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2 356 4e-96 >seq2 Length=187415 Score = 356 bits (394), Expect = 4e-96 Identities = 236/258 (91%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 183154 ACTCGCTGGCTGTGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 183095 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 183094 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGCG 183036 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || | || |||||||||||||||||||||||||||||||||||| ||||| Sbjct 183035 TACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 182977 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 182976 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGA 182917 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 182916 AAGAGCTCTCAATCTGTC 182899 Score = 174 bits (192), Expect = 3e-41 Identities = 139/162 (86%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 49 AGGGCATCACAGACCTGTT-ATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCT 107 ||| ||||||||||||||| |||||||||||||||||| |||| || ||| ||||||||| Sbjct 3370 AGGACATCACAGACCTGTTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCT 3312 Query 108 CTAAGAAGCCAGCCACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTT 166 ||||||||||||| | ||| || | || |||||||||||||| | ||||||| ||| Sbjct 3311 CTAAGAAGCCAGCGTACTGCCAAAG-CAATACGGGCTATTTAGCAGATCAAGGTCTTGTT 3253 Query 167 CGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGA 208 | ||||| |||||| |||||||||||||||||||||||||| Sbjct 3252 CTCTATCGCAATTAAGCAGACAAATCACTCCACCAACTAAGA 3211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796790297217