Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq54 343 1e-89
seq85 246 2e-60
>seq54
Length=76171
Score = 343 bits (380), Expect = 1e-89
Identities = 1233/1908 (65%), Gaps = 70/1908 (4%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||||||||| | |||||| || | ||| | ||| ||||||||||| ||
Sbjct 19661 ATCAACAGTGAACTGGATAGGCGCAGCAGCGGCTTGGGTACGAAGGTAGTACATGCCAGT 19602
Query 65137 CTTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGC 65194
||| || || ||| |||| || ||| ||||| | || | ||||| | | | ||
Sbjct 19601 CTTCAGACCCAGCTT-CCAACCAGTGAAGTGCAT-GCTGGTGATTTTACCCATGGTGGGA 19544
Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254
|| || ||| || |||| ||| || ||| ||||| | ||||||||| ||||||
Sbjct 19543 TCCTTCATATGAATGTTCAGCGATTGCGACTGGTCGATAAAGGCACCACGATCAGCAGCC 19484
Query 65255 ATGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACC 65311
|| | ||| |||| | || |||||||| || ||||||||||| | |
Sbjct 19483 ATCTGGACAACCGTACGCTGA---GAAATCTCCCATACAGTCTTGTACAGACCCTTGATG 19427
Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACG 65370
||| ||||| ||||| || | ||||||| | || ||||| ||||| ||
Sbjct 19426 TCAGCAGGAATGCTGGGAATGTTTTGAATTGAACCATTGTCG-GCAATGATGCGGTTCTT 19368
Query 65371 CATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGAC 65430
||| || || ||||||| || | || | || | | | || | |||| |||
Sbjct 19367 CATGGAATCAGACCACAGGCCAAGGTCAACCAGGTCACGCAACAGCCAGGGGTTGACGAC 19308
Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490
||||||||||| | || ||||| || || |||||||| ||| ||| || ||| |
Sbjct 19307 CTGGAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCA 19248
Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550
||| | ||||| ||||| |||| |||| || || |||||||| || | | || ||
Sbjct 19247 TTCGTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCAAGTAGTAAAGA 19188
Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTT 65610
||| || | |||| | | || | | || | | ||||| ||| | |||
Sbjct 19187 GTTGCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCCCAGA--GGTCA 19130
Query 65611 ATCGTCG--ACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG----CCGG 65664
| | | |||| | ||||| || |||||| | || |||| | ||
Sbjct 19129 CTGGGAGTGACATTC------CACATGTCAAACTGCAGGATGCC----CTGGGACACAGG 19080
Query 65665 TGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAG 65724
|| || | | | |||| ||||||| || |||| | || || ||| ||
Sbjct 19079 CGAGCCCTCGTAGGTCGAGTACTTGCCCTCCTTCTGAGCAATCTCGCACGAGGCCTCAAG 19020
Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTC 65784
|| || |||||||||||||| || | || || | || |||||| | |||
Sbjct 19019 AGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGCCGACTC 18960
Query 65785 GTACGGCATACCCAT---CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGAT 65841
| ||||| | || ||||| | | |||||| ||||| ||||| || | ||||||
Sbjct 18959 AAAGGGCATGCGCAGAGCCAGGA---AGGCGTCGGCAAGACCCTGAACACCGACACCGAT 18903
Query 65842 GGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGAT 65901
|||||| ||||||| ||| || |||| |||||||||| |||| ||||||
Sbjct 18902 GGGACGGTGACGCATGTTGCTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACATCGAT 18843
Query 65902 AATGCGATTCAAATTGCGTGTCACCACATGCACGAT-ACGTCG--CAATTGTTCGAAATC 65958
||||| |||| ||||| || ||| | | | || ||| || | | ||||||
Sbjct 18842 GATGCGGTTCAGGTTGCGA---ACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAATC 18786
Query 65959 AAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018
| |||| | || | | | | ||| || ||||| | ||| ||
Sbjct 18785 ----------GTACGAGTTGT--TGGTGTAGTCAATAAAGGCAGGGAGGGCCAAAGAAGC 18738
Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078
|||||||||||||| | ||| |||||||| || || | ||| || |||||||| ||
Sbjct 18737 AAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTCAGTGCACAGGTT 18678
Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138
|| ||| || || |||| |||| || ||||||||||| ||||| ||||||||
Sbjct 18677 GGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTA 18618
Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198
|| |||| |||| | || |||||| || | || | ||| || | ||| || |
Sbjct 18617 CAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAGCTTTTG 18558
Query 66199 TGCCTTCACCGTACGT--ACCGC--CCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTT 66254
|| || | || || ||| | || ||||| || || | ||||| | |
Sbjct 18557 GGCTTTGAGAGTCAGTCGACCACGACCCTCCTTT----TCATACTTCTCGTACAATGCCT 18502
Query 66255 CGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACC 66314
|||| || || | || | ||||| || |||| | || ||||| || | ||
Sbjct 18501 CGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATAAGAGTCC 18442
Query 66315 AATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGA 66374
| || | | || ||| ||||| ||| || |||||||| ||||| || || ||| |
Sbjct 18441 ACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCCAGGAAAA 18382
Query 66375 GATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGA 66434
|||| || || || || || |||||||||| ||||| | |||||||||||||| |
Sbjct 18381 GATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGAACTCAAAAA 18322
Query 66435 TGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTT 66494
|| || ||||| || || |||||||| || || | || ||| ||| |||||| |
Sbjct 18321 CATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTGCCACCCT 18262
Query 66495 GGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATT 66554
|||| ||||| ||||| |||||||| ||||||| ||| || |||| ||||| ||
Sbjct 18261 GGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTCGAGG 18202
Query 66555 TGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAA 66614
| || || |||||| | ||| || || || || || ||| || ||||| ||||
Sbjct 18201 TACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGTTCAGGCCAA 18142
Query 66615 TACCACCGGCCGTCTTCGAGATGGCAGCACAA----TCGGCCACTGTCCGGAATATGCCG 66670
||||||| ||| |||| ||||| ||| ||| || | | |||| | || ||
Sbjct 18141 TACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAG--AGTGTC--ATAGATACCC 18086
Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730
|||||| |||| |||| || || |||| |||| ||| ||||| | | ||| ||
Sbjct 18085 TCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGAGTA 18026
Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790
|||| ||| || || || | || || || ||| | | || |||||| |||||
Sbjct 18025 CCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGTAG 17966
Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGG 66850
||||| | |||| |||| | || || || || | ||| ||||| | | |
Sbjct 17965 GTCTCCAGGACACGTTCAACATCATCACCCCAGATTCCAACAGCAACACGCATGATCATG 17906
Query 66851 TATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTC 66910
| |||||| || ||||| | | | | | | || | ||| || || || || |||
Sbjct 17905 TGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTATGAACGCTCAAGCGTC 17846
Query 66911 TTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGCC 66958
|||| ||||||||| ||| |||||||| | | | |||||| |||
Sbjct 17845 TTGAAACCAAAGTATTGGTAGTTGAAATCACGATCGTACACGATAGCC 17798
>seq85
Length=66049
Score = 246 bits (272), Expect = 2e-60
Identities = 607/916 (66%), Gaps = 20/916 (2%)
Strand=Plus/Plus
Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086
|||||||| |||| ||||| ||| || ||||| | ||||||||| |||| | ||
Sbjct 2597 GAACCCCTTCTGCAGGAGAACCCTAACCGCTTCGTGCTCTTCCCCATCAAGTACCACGAG 2656
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || ||||| |||||||| | |||||| | ||| ||
Sbjct 2657 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTG 2716
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203
||||| || | | |||||| | || | || | || | || ||| |||
Sbjct 2717 TCCAAGGATCTCCACGACTGGAACAACCGCAT---GAACAAAGACGAGCAGTTCTTTATC 2773
Query 61204 ---CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260
|| | |||| ||||||||||| || |||||||||||||| ||||| || | ||
Sbjct 2774 TCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTCAACGAGAACTTGGTTGAG 2833
Query 61261 CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320
|||||| | ||||| || | | ||||| || || || || || ||||||||
Sbjct 2834 CGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATG 2893
Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380
||||| || | ||||| |||| ||| | ||||| ||||| ||||||| |||||
Sbjct 2894 ATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGATACCTACATCAAGGAGCCC 2953
Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440
|| | ||| ||||||| ||||| || || || || | || || ||
Sbjct 2954 GCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCCTGCATTCGCCGCAAGGCT 3013
Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGG 61498
|| |||||| | || |||||| || |||| | |||| |||| | || | | |
Sbjct 3014 GACTGGGCCCTGAAGTGGATCGCC--GACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTG 3071
Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558
| ||||| | ||||||||| | || ||| || | |||||| | ||||| ||| ||
Sbjct 3072 CCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGC 3131
Query 61559 AGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618
|| ||||| || ||||| |||||||||||| ||| ||| |||| || || || ||||
Sbjct 3132 GCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATGAGG 3191
Query 61619 GCATGCATTGTGATTTTGCTGTTTTG--CTATTCAAACGCTATCTGGTGAATCGTCCGTC 61676
|| | || ||| |||||| || ||| || || || | || || ||
Sbjct 3192 GCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCACCTTAAC-----AACCGCCCCAG 3246
Query 61677 GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736
|| | | | | || || | || || || |||| || |||| || ||||
Sbjct 3247 CAAGCAACTGATTGAGGACATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGAC 3306
Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796
||| || ||||| | || | |||||||| | || ||| | || |||||
Sbjct 3307 TGAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGACCTCATGAAGACCTACATTGA 3366
Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856
|||||| ||||||||||| || | | | || | | | |||| || | | ||
Sbjct 3367 ATTTGTCGCCGACCGTCTCCTGATGGCCCTCGGCAACGACAAGGTCTACAAGGCCAGCAA 3426
Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916
||| ||||| || ||||| | || ||||| | ||||||||| || || |||||||| ||
Sbjct 3427 CCCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCG 3486
Query 61917 TGTAGGCGACTATCAA 61932
||| | |||||| |||
Sbjct 3487 TGTCGCCGACTACCAA 3502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397561909382480
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