Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq54 343 1e-89 seq85 246 2e-60 >seq54 Length=76171 Score = 343 bits (380), Expect = 1e-89 Identities = 1233/1908 (65%), Gaps = 70/1908 (4%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | |||||| || | ||| | ||| ||||||||||| || Sbjct 19661 ATCAACAGTGAACTGGATAGGCGCAGCAGCGGCTTGGGTACGAAGGTAGTACATGCCAGT 19602 Query 65137 CTTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGC 65194 ||| || || ||| |||| || ||| ||||| | || | ||||| | | | || Sbjct 19601 CTTCAGACCCAGCTT-CCAACCAGTGAAGTGCAT-GCTGGTGATTTTACCCATGGTGGGA 19544 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || || ||| || |||| ||| || ||| ||||| | ||||||||| |||||| Sbjct 19543 TCCTTCATATGAATGTTCAGCGATTGCGACTGGTCGATAAAGGCACCACGATCAGCAGCC 19484 Query 65255 ATGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACC 65311 || | ||| |||| | || |||||||| || ||||||||||| | | Sbjct 19483 ATCTGGACAACCGTACGCTGA---GAAATCTCCCATACAGTCTTGTACAGACCCTTGATG 19427 Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACG 65370 ||| ||||| ||||| || | ||||||| | || ||||| ||||| || Sbjct 19426 TCAGCAGGAATGCTGGGAATGTTTTGAATTGAACCATTGTCG-GCAATGATGCGGTTCTT 19368 Query 65371 CATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGAC 65430 ||| || || ||||||| || | || | || | | | || | |||| ||| Sbjct 19367 CATGGAATCAGACCACAGGCCAAGGTCAACCAGGTCACGCAACAGCCAGGGGTTGACGAC 19308 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 ||||||||||| | || ||||| || || |||||||| ||| ||| || ||| | Sbjct 19307 CTGGAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCA 19248 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 ||| | ||||| ||||| |||| |||| || || |||||||| || | | || || Sbjct 19247 TTCGTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCAAGTAGTAAAGA 19188 Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTT 65610 ||| || | |||| | | || | | || | | ||||| ||| | ||| Sbjct 19187 GTTGCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCCCAGA--GGTCA 19130 Query 65611 ATCGTCG--ACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG----CCGG 65664 | | | |||| | ||||| || |||||| | || |||| | || Sbjct 19129 CTGGGAGTGACATTC------CACATGTCAAACTGCAGGATGCC----CTGGGACACAGG 19080 Query 65665 TGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAG 65724 || || | | | |||| ||||||| || |||| | || || ||| || Sbjct 19079 CGAGCCCTCGTAGGTCGAGTACTTGCCCTCCTTCTGAGCAATCTCGCACGAGGCCTCAAG 19020 Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTC 65784 || || |||||||||||||| || | || || | || |||||| | ||| Sbjct 19019 AGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGCCGACTC 18960 Query 65785 GTACGGCATACCCAT---CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGAT 65841 | ||||| | || ||||| | | |||||| ||||| ||||| || | |||||| Sbjct 18959 AAAGGGCATGCGCAGAGCCAGGA---AGGCGTCGGCAAGACCCTGAACACCGACACCGAT 18903 Query 65842 GGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGAT 65901 |||||| ||||||| ||| || |||| |||||||||| |||| |||||| Sbjct 18902 GGGACGGTGACGCATGTTGCTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACATCGAT 18843 Query 65902 AATGCGATTCAAATTGCGTGTCACCACATGCACGAT-ACGTCG--CAATTGTTCGAAATC 65958 ||||| |||| ||||| || ||| | | | || ||| || | | |||||| Sbjct 18842 GATGCGGTTCAGGTTGCGA---ACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAATC 18786 Query 65959 AAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018 | |||| | || | | | | ||| || ||||| | ||| || Sbjct 18785 ----------GTACGAGTTGT--TGGTGTAGTCAATAAAGGCAGGGAGGGCCAAAGAAGC 18738 Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078 |||||||||||||| | ||| |||||||| || || | ||| || |||||||| || Sbjct 18737 AAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTCAGTGCACAGGTT 18678 Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138 || ||| || || |||| |||| || ||||||||||| ||||| |||||||| Sbjct 18677 GGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTA 18618 Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198 || |||| |||| | || |||||| || | || | ||| || | ||| || | Sbjct 18617 CAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAGCTTTTG 18558 Query 66199 TGCCTTCACCGTACGT--ACCGC--CCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTT 66254 || || | || || ||| | || ||||| || || | ||||| | | Sbjct 18557 GGCTTTGAGAGTCAGTCGACCACGACCCTCCTTT----TCATACTTCTCGTACAATGCCT 18502 Query 66255 CGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACC 66314 |||| || || | || | ||||| || |||| | || ||||| || | || Sbjct 18501 CGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATAAGAGTCC 18442 Query 66315 AATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGA 66374 | || | | || ||| ||||| ||| || |||||||| ||||| || || ||| | Sbjct 18441 ACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCCAGGAAAA 18382 Query 66375 GATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGA 66434 |||| || || || || || |||||||||| ||||| | |||||||||||||| | Sbjct 18381 GATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGAACTCAAAAA 18322 Query 66435 TGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTT 66494 || || ||||| || || |||||||| || || | || ||| ||| |||||| | Sbjct 18321 CATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTGCCACCCT 18262 Query 66495 GGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATT 66554 |||| ||||| ||||| |||||||| ||||||| ||| || |||| ||||| || Sbjct 18261 GGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTCGAGG 18202 Query 66555 TGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAA 66614 | || || |||||| | ||| || || || || || ||| || ||||| |||| Sbjct 18201 TACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGTTCAGGCCAA 18142 Query 66615 TACCACCGGCCGTCTTCGAGATGGCAGCACAA----TCGGCCACTGTCCGGAATATGCCG 66670 ||||||| ||| |||| ||||| ||| ||| || | | |||| | || || Sbjct 18141 TACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAG--AGTGTC--ATAGATACCC 18086 Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730 |||||| |||| |||| || || |||| |||| ||| ||||| | | ||| || Sbjct 18085 TCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGAGTA 18026 Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790 |||| ||| || || || | || || || ||| | | || |||||| ||||| Sbjct 18025 CCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGTAG 17966 Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGG 66850 ||||| | |||| |||| | || || || || | ||| ||||| | | | Sbjct 17965 GTCTCCAGGACACGTTCAACATCATCACCCCAGATTCCAACAGCAACACGCATGATCATG 17906 Query 66851 TATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTC 66910 | |||||| || ||||| | | | | | | || | ||| || || || || ||| Sbjct 17905 TGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTATGAACGCTCAAGCGTC 17846 Query 66911 TTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGCC 66958 |||| ||||||||| ||| |||||||| | | | |||||| ||| Sbjct 17845 TTGAAACCAAAGTATTGGTAGTTGAAATCACGATCGTACACGATAGCC 17798 >seq85 Length=66049 Score = 246 bits (272), Expect = 2e-60 Identities = 607/916 (66%), Gaps = 20/916 (2%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||||| |||| ||||| ||| || ||||| | ||||||||| |||| | || Sbjct 2597 GAACCCCTTCTGCAGGAGAACCCTAACCGCTTCGTGCTCTTCCCCATCAAGTACCACGAG 2656 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || ||||| |||||||| | |||||| | ||| || Sbjct 2657 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTG 2716 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 ||||| || | | |||||| | || | || | || | || ||| ||| Sbjct 2717 TCCAAGGATCTCCACGACTGGAACAACCGCAT---GAACAAAGACGAGCAGTTCTTTATC 2773 Query 61204 ---CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260 || | |||| ||||||||||| || |||||||||||||| ||||| || | || Sbjct 2774 TCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTCAACGAGAACTTGGTTGAG 2833 Query 61261 CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 |||||| | ||||| || | | ||||| || || || || || |||||||| Sbjct 2834 CGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATG 2893 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||| || | ||||| |||| ||| | ||||| ||||| ||||||| ||||| Sbjct 2894 ATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGATACCTACATCAAGGAGCCC 2953 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 || | ||| ||||||| ||||| || || || || | || || || Sbjct 2954 GCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCCTGCATTCGCCGCAAGGCT 3013 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGG 61498 || |||||| | || |||||| || |||| | |||| |||| | || | | | Sbjct 3014 GACTGGGCCCTGAAGTGGATCGCC--GACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTG 3071 Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558 | ||||| | ||||||||| | || ||| || | |||||| | ||||| ||| || Sbjct 3072 CCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGC 3131 Query 61559 AGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 || ||||| || ||||| |||||||||||| ||| ||| |||| || || || |||| Sbjct 3132 GCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATGAGG 3191 Query 61619 GCATGCATTGTGATTTTGCTGTTTTG--CTATTCAAACGCTATCTGGTGAATCGTCCGTC 61676 || | || ||| |||||| || ||| || || || | || || || Sbjct 3192 GCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCACCTTAAC-----AACCGCCCCAG 3246 Query 61677 GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736 || | | | | || || | || || || |||| || |||| || |||| Sbjct 3247 CAAGCAACTGATTGAGGACATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGAC 3306 Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 ||| || ||||| | || | |||||||| | || ||| | || ||||| Sbjct 3307 TGAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGACCTCATGAAGACCTACATTGA 3366 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856 |||||| ||||||||||| || | | | || | | | |||| || | | || Sbjct 3367 ATTTGTCGCCGACCGTCTCCTGATGGCCCTCGGCAACGACAAGGTCTACAAGGCCAGCAA 3426 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 ||| ||||| || ||||| | || ||||| | ||||||||| || || |||||||| || Sbjct 3427 CCCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCG 3486 Query 61917 TGTAGGCGACTATCAA 61932 ||| | |||||| ||| Sbjct 3487 TGTCGCCGACTACCAA 3502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561909382480