Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_032108.1
Length=589068
Score E
Sequences producing significant alignments: (Bits) Value
seq499 104 9e-17
seq88 102 3e-16
>seq499
Length=17841
Score = 104 bits (114), Expect = 9e-17
Identities = 112/146 (77%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484
|||| ||||||||||| ||||||| | ||||||| || ||||| || || ||||| |
Sbjct 790 CAATGGTCATACGAGACGGAATGGCGTGAGGGTTAATAATGATATCGGGAGTGATGCCCT 849
Query 364485 CAGCG-GTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543
| ||| |||||||||||||| || | | ||| |||||| || || ||||| |
Sbjct 850 C-GCGAGTAAAGGGCATATCCTCTTGTCTGTAGGTGACACCAATAGTACCTTTTTGACCG 908
Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569
| |||||||||||||||||| |||||
Sbjct 909 TGGCGAGAAGCAAACTTGTCACCAAT 934
>seq88
Length=65246
Score = 102 bits (112), Expect = 3e-16
Identities = 212/314 (68%), Gaps = 4/314 (1%)
Strand=Plus/Minus
Query 12734 ACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCA 12793
|||||||| ||| || |||||||| | | || || ||||| || | ||| ||||||
Sbjct 13153 ACATCGTAGTAGATGACGTTCATGCCCATAGCTTCAGCGAGGACGGACAGCTGGGAACCA 13094
Query 12794 ATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTG--AG 12851
|||| ||| ||||| | ||||| |||||||| || | | || | ||| |||| ||
Sbjct 13093 ATGTGACCGTAACCAATGATACCGAGGGTCTTGCCACGGATCTCCCAGCA--CTTGGCAG 13036
Query 12852 AAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAA 12911
| ||||||||| | || |||| | || | | || |||| ||| || | |
Sbjct 13035 AGACCTTGTTCCAGGTCCCACGGTGCATCTCCAGGGAGCGGTCACCAAGCTGGCGGGCCA 12976
Query 12912 GATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAAT 12971
| || | || || |||| ||||| || ||| | || |||| ||||||||| |
Sbjct 12975 GGGAGATGATTTCACCAATGACAAGCTCAGCGACGGAGCGAGAGTTGGCAAAGGGAGAGT 12916
Query 12972 TAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGC 13031
| ||||| ||||| || | |||| || || || | ||||| | | ||||||||
Sbjct 12915 TGAAGACGGCAATACCGCGCTTGGCGGCGTACTCGAGGTCGACCTGGTTGGTACCAATGC 12856
Query 13032 AGAAGCATCCTATG 13045
||||||| || |||
Sbjct 12855 AGAAGCAGCCGATG 12842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1884856043315501
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |