Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq499 104 9e-17 seq88 102 3e-16 >seq499 Length=17841 Score = 104 bits (114), Expect = 9e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||||||||| ||||||| | ||||||| || ||||| || || ||||| | Sbjct 790 CAATGGTCATACGAGACGGAATGGCGTGAGGGTTAATAATGATATCGGGAGTGATGCCCT 849 Query 364485 CAGCG-GTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | ||| |||||||||||||| || | | ||| |||||| || || ||||| | Sbjct 850 C-GCGAGTAAAGGGCATATCCTCTTGTCTGTAGGTGACACCAATAGTACCTTTTTGACCG 908 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | |||||||||||||||||| ||||| Sbjct 909 TGGCGAGAAGCAAACTTGTCACCAAT 934 >seq88 Length=65246 Score = 102 bits (112), Expect = 3e-16 Identities = 212/314 (68%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 12734 ACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCA 12793 |||||||| ||| || |||||||| | | || || ||||| || | ||| |||||| Sbjct 13153 ACATCGTAGTAGATGACGTTCATGCCCATAGCTTCAGCGAGGACGGACAGCTGGGAACCA 13094 Query 12794 ATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTG--AG 12851 |||| ||| ||||| | ||||| |||||||| || | | || | ||| |||| || Sbjct 13093 ATGTGACCGTAACCAATGATACCGAGGGTCTTGCCACGGATCTCCCAGCA--CTTGGCAG 13036 Query 12852 AAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAA 12911 | ||||||||| | || |||| | || | | || |||| ||| || | | Sbjct 13035 AGACCTTGTTCCAGGTCCCACGGTGCATCTCCAGGGAGCGGTCACCAAGCTGGCGGGCCA 12976 Query 12912 GATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAAT 12971 | || | || || |||| ||||| || ||| | || |||| ||||||||| | Sbjct 12975 GGGAGATGATTTCACCAATGACAAGCTCAGCGACGGAGCGAGAGTTGGCAAAGGGAGAGT 12916 Query 12972 TAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGC 13031 | ||||| ||||| || | |||| || || || | ||||| | | |||||||| Sbjct 12915 TGAAGACGGCAATACCGCGCTTGGCGGCGTACTCGAGGTCGACCTGGTTGGTACCAATGC 12856 Query 13032 AGAAGCATCCTATG 13045 ||||||| || ||| Sbjct 12855 AGAAGCAGCCGATG 12842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884856043315501