Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq103 664 0.0 >seq103 Length=46166 Score = 664 bits (736), Expect = 0.0 Identities = 554/669 (83%), Gaps = 24/669 (4%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||||||| ||||||||||| |||||||||||| ||||||||||||||||| || |||| Sbjct 14942 AGCTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATCTCTT 15001 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 15002 CTAAAGCTAAATATAGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 15061 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 15062 AGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTATGAC 15121 Query 208 CAGACTTG---CCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-C 263 |||||||| | |||||| | | |||| ||| | | |||| | | | || | Sbjct 15122 CAGACTTGTTTCTGGCAGTTTCGTTA---GCCCTCGGGCTGATTTACTC-TGTCCAGTAC 15177 Query 264 AGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTGG---CCCCCTTC 318 ||||||||||||| | | | ||| ||| |||||| | ||||| || | |||||||| Sbjct 15178 AGGCCAGCATCAGTTTGCTGTCGG--GGAGAAAGGCTCTGGGAACGTAGCTCCCCCCTTC 15235 Query 319 ----GGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTC 374 |||| |||||||||||| | ||| | || | |||||||| ||||||| Sbjct 15236 TGGGGGGGAGTGTTATAGCCCTCTGCATAATACCCTTCGGC-AGACTGAGGACCGCGCTT 15294 Query 375 CGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGT 434 |||| ||||||||||||||||||| | |||| ||||||||| ||||||||||||||||| Sbjct 15295 CGGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGT 15354 Query 435 CTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGG 494 | | | | | ||||||||||||||||| |||||| |||||||||||||||||||| ||| Sbjct 15355 CAACCTTATGTGCGAGTGTTTGGGTGTAAAACCCCAGCGCGTAATGAAAGTGAACGTAGG 15414 Query 495 TGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAA 554 || || | || ||| ||||||||||| ||||||| ||||||||||||||||||| Sbjct 15415 TGAGA----GCTTCGGCGCATCATCGACCGATTCTGATGTTTTCGGATGGATTTGAGTAA 15470 Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | | | |||||||||||| |||||||||||| || ||||||||||||||||| Sbjct 15471 GAGCACACAGGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATAGGGTGAAGCCAGAG 15530 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || | | Sbjct 15531 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGAGCA 15590 Query 675 TAGGGGCGA 683 | ||||||| Sbjct 15591 TGGGGGCGA 15599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079982561150