Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq545 230 2e-55 seq126 149 5e-31 >seq545 Length=97716 Score = 230 bits (254), Expect = 2e-55 Identities = 437/640 (68%), Gaps = 10/640 (2%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 |||||||| |||||||| |||||||| ||||| | ||| ||||| || |||||| | | Sbjct 74281 GGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATA 74340 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || ||||| || ||| || ||| ||||| || | ||| | ||||| |||||||| Sbjct 74341 ATCTCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 74400 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| || ||||| | |||| | || |||| || ||| |||| || | ||| Sbjct 74401 TTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATG 74460 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCAC---CGTACGTACCGC--CCTACCTTTGCGTTCGT 66236 || | ||| || | ||||| || | | || ||||| || |||| || | Sbjct 74461 GCATACCACAGCTTCTGGGCCTTGACAACCATGCG-ACCGCGACCCTCCTTC----TCAT 74515 Query 66237 AATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGT 66296 | | ||| || || || || ||| || | || | || | ||| || | | Sbjct 74516 ACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCAT 74575 Query 66297 GTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTA 66356 || ||||| |||| ||| || ||| || || ||||| ||| || || ||| | Sbjct 74576 TGGGGCACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGA 74635 Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA 66416 |||||||||| | || || || || || || || || | ||||| || ||||| | Sbjct 74636 TCCAGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTA 74695 Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476 ||||||||||||||||| || ||||||||||| || ||||| || || || | || Sbjct 74696 GGTCGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGG 74755 Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536 || ||| ||||| ||||| || || || ||| |||||||| ||||||| ||| | Sbjct 74756 GTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGG 74815 Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596 | || | ||||| || | || || ||||| | ||| ||| || || || ||| Sbjct 74816 GAACAATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATAC 74875 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 ||||||||| ||||| |||||||||||| |||| || || Sbjct 74876 GGTGAACATTGAGACCGATACCACCGGCCATCTTGGAAAT 74915 Score = 96.9 bits (106), Expect = 3e-15 Identities = 314/476 (66%), Gaps = 24/476 (5%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| ||||| | |||||| |||| || | || |||||||| || ||| Sbjct 73375 TCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATACCCGTC 73434 Query 65138 TTGAGGCC-AG---CACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCG 65192 |||||||| || | ||| ||| || ||||| | || | || |||| | | | Sbjct 73435 TTGAGGCCCAGTTTCCAGCCG-GCAAAG---TGCAT-GCTGGTGATCTTGCCCATGGTGG 73489 Query 65193 GCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAG 65252 | || || || || || | ||||| || || ||| || |||||| || |||| Sbjct 73490 GATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAG 73549 Query 65253 CCATGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTA 65309 |||| | ||| |||| | || |||||||| || ||||||||||| | Sbjct 73550 CCATTTGTACAACTGTACGCTGG---GAAATCTCCCAAACCGTCTTGTACAGAGCTTTAA 73606 Query 65310 CCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTA 65368 ||| ||||| ||||| ||| | || || | || |||||||||||||| Sbjct 73607 TATCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCG-GCAATAATGCGATTC 73665 Query 65369 CGCATCGACTCTGACCACAAACCCAAATCGATAAGAT---GTTGAACCAAGTGACGATTG 65425 ||| || ||||| | ||| | ||||| || | || ||| | || | ||| Sbjct 73666 TTCATATTGTCAGACCATAGACCAAGATCGACCAGGTCACGTAGAAGCCAGGGG---TTG 73722 Query 65426 ATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCA 65485 | ||| ||||||||||| | || || || || ||||||||||||||| ||||||| Sbjct 73723 ACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCA 73782 Query 65486 AAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGAC 65541 ||| | ||| ||||||| ||||| || | || || || |||||||| || || Sbjct 73783 AAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAAC 73838 >seq126 Length=40607 Score = 149 bits (164), Expect = 5e-31 Identities = 551/855 (64%), Gaps = 20/855 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || || ||||||||||| | |||||| | ||| | Sbjct 38658 ATTTGGCAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 38599 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | || | | | || | || || | ||||| Sbjct 38598 TCCAAGGATCTCCACGACTGGAACAACCGCCTGAACAAG-GACGAGCAGTACTTCATCTC 38540 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| ||||| || || || || ||||| || || | | || || Sbjct 38539 CCACATTCTTGCCTTCTTCGCCGCCTCTGATGGCATTGTCAACGAAAACCTCGTTGAGCG 38480 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || ||||| || | | ||||| || || |||||||| |||||||| || Sbjct 38479 CTTCTCGGGCGAGGTTCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 38420 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| || | ||||| || | ||| | || ||||| || ||||||| ||||| | Sbjct 38419 GGAAAACATTCACTCTGAAACCTACTCGCTGCTGATCGACACCTACATCAAGGAGCCATC 38360 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | || | |||||||||| || || || || || | || || || || Sbjct 38359 ACAGCGCACATACCTGTTCAATGCAATTGACACTATTCCCTGCATCCGCCGCAAGGCCGA 38300 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGGCT--ACATTTGGTGAACGATTGCTGGCA 61500 ||||| | || ||||||||| |||| | | || || | | || || | || Sbjct 38299 CTGGGCTCTGAAGTGGATCACCG--ACAAGGAGTCGACCTTCGCCCAGCGCCTGGTAGCT 38242 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 || || | ||||| || | |||||| || | || ||| | || || ||| || Sbjct 38241 TTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGGCTGCGC 38182 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || ||||| || ||||| |||||||||||| || ||| | || || || || ||||| Sbjct 38181 AAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTGATGAGGGT 38122 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 |||| || |||||| |||| ||| || | ||| || || || || Sbjct 38121 CTGCACACCGACTTTGCTTGCCTGCTGTTCTCAC---ACCTGAACAACCGCCCCAGCAAG 38065 Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGAC 61740 || | ||| |||| | ||| || || ||||| |||| || || || || Sbjct 38064 GACCTCGTGCAAAAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAG 38005 Query 61741 GCTTTGCCC----GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 ||| ||||| |||| || | || ||||| | || ||| ||| || ||||| Sbjct 38004 GCTCTGCCCTGTGGTCT-AC---TGGGAATGAACGCCGATCTGATGAAGCAATACATTGA 37949 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856 |||||||| ||||| ||| | || | | | || | || | | || | | | || Sbjct 37948 GTTTGTTGCTGACCGCCTGCTTGTTGCTCTAGGCAACGAGAAGGTTTACCGTGCCACGAA 37889 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 ||| || || |||||||| | || ||||| | |||||||| || || || ||||| || Sbjct 37888 CCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTGAGAAGCG 37829 Query 61917 TGTAGGCGACTATCA 61931 ||| || ||||| || Sbjct 37828 TGTCGGTGACTACCA 37814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564060722320