Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq545 230 2e-55
seq126 149 5e-31
>seq545
Length=97716
Score = 230 bits (254), Expect = 2e-55
Identities = 437/640 (68%), Gaps = 10/640 (2%)
Strand=Plus/Plus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
|||||||| |||||||| |||||||| ||||| | ||| ||||| || |||||| | |
Sbjct 74281 GGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATA 74340
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
|| || ||||| || ||| || ||| ||||| || | ||| | ||||| ||||||||
Sbjct 74341 ATCTCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 74400
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
||||| || ||||| | |||| | || |||| || ||| |||| || | |||
Sbjct 74401 TTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATG 74460
Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCAC---CGTACGTACCGC--CCTACCTTTGCGTTCGT 66236
|| | ||| || | ||||| || | | || ||||| || |||| || |
Sbjct 74461 GCATACCACAGCTTCTGGGCCTTGACAACCATGCG-ACCGCGACCCTCCTTC----TCAT 74515
Query 66237 AATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGT 66296
| | ||| || || || || ||| || | || | || | ||| || | |
Sbjct 74516 ACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCAT 74575
Query 66297 GTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTA 66356
|| ||||| |||| ||| || ||| || || ||||| ||| || || ||| |
Sbjct 74576 TGGGGCACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGA 74635
Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA 66416
|||||||||| | || || || || || || || || | ||||| || ||||| |
Sbjct 74636 TCCAGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTA 74695
Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476
||||||||||||||||| || ||||||||||| || ||||| || || || | ||
Sbjct 74696 GGTCGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGG 74755
Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536
|| ||| ||||| ||||| || || || ||| |||||||| ||||||| ||| |
Sbjct 74756 GTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGG 74815
Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596
| || | ||||| || | || || ||||| | ||| ||| || || || |||
Sbjct 74816 GAACAATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATAC 74875
Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636
||||||||| ||||| |||||||||||| |||| || ||
Sbjct 74876 GGTGAACATTGAGACCGATACCACCGGCCATCTTGGAAAT 74915
Score = 96.9 bits (106), Expect = 3e-15
Identities = 314/476 (66%), Gaps = 24/476 (5%)
Strand=Plus/Plus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || ||||| ||||| | |||||| |||| || | || |||||||| || |||
Sbjct 73375 TCCACAGTGAATTGGATGGGTGCAGCAGCAGCCTGCGTACGTAGGTAGTACATACCCGTC 73434
Query 65138 TTGAGGCC-AG---CACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCG 65192
|||||||| || | ||| ||| || ||||| | || | || |||| | | |
Sbjct 73435 TTGAGGCCCAGTTTCCAGCCG-GCAAAG---TGCAT-GCTGGTGATCTTGCCCATGGTGG 73489
Query 65193 GCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAG 65252
| || || || || || | ||||| || || ||| || |||||| || ||||
Sbjct 73490 GATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAG 73549
Query 65253 CCATGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTA 65309
|||| | ||| |||| | || |||||||| || ||||||||||| |
Sbjct 73550 CCATTTGTACAACTGTACGCTGG---GAAATCTCCCAAACCGTCTTGTACAGAGCTTTAA 73606
Query 65310 CCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTA 65368
||| ||||| ||||| ||| | || || | || ||||||||||||||
Sbjct 73607 TATCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCG-GCAATAATGCGATTC 73665
Query 65369 CGCATCGACTCTGACCACAAACCCAAATCGATAAGAT---GTTGAACCAAGTGACGATTG 65425
||| || ||||| | ||| | ||||| || | || ||| | || | |||
Sbjct 73666 TTCATATTGTCAGACCATAGACCAAGATCGACCAGGTCACGTAGAAGCCAGGGG---TTG 73722
Query 65426 ATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCA 65485
| ||| ||||||||||| | || || || || ||||||||||||||| |||||||
Sbjct 73723 ACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCA 73782
Query 65486 AAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGAC 65541
||| | ||| ||||||| ||||| || | || || || |||||||| || ||
Sbjct 73783 AAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAAC 73838
>seq126
Length=40607
Score = 149 bits (164), Expect = 5e-31
Identities = 551/855 (64%), Gaps = 20/855 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| |||||||| ||||| || || ||||||||||| | |||||| | ||| |
Sbjct 38658 ATTTGGCAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 38599
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202
||||| || | | |||||| | || | | | || | || || | |||||
Sbjct 38598 TCCAAGGATCTCCACGACTGGAACAACCGCCTGAACAAG-GACGAGCAGTACTTCATCTC 38540
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||| ||||| || || || || ||||| || || | | || ||
Sbjct 38539 CCACATTCTTGCCTTCTTCGCCGCCTCTGATGGCATTGTCAACGAAAACCTCGTTGAGCG 38480
Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322
||| || ||||| || | | ||||| || || |||||||| |||||||| ||
Sbjct 38479 CTTCTCGGGCGAGGTTCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 38420
Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382
||| || | ||||| || | ||| | || ||||| || ||||||| ||||| |
Sbjct 38419 GGAAAACATTCACTCTGAAACCTACTCGCTGCTGATCGACACCTACATCAAGGAGCCATC 38360
Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442
| || | |||||||||| || || || || || | || || || ||
Sbjct 38359 ACAGCGCACATACCTGTTCAATGCAATTGACACTATTCCCTGCATCCGCCGCAAGGCCGA 38300
Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGGCT--ACATTTGGTGAACGATTGCTGGCA 61500
||||| | || ||||||||| |||| | | || || | | || || | ||
Sbjct 38299 CTGGGCTCTGAAGTGGATCACCG--ACAAGGAGTCGACCTTCGCCCAGCGCCTGGTAGCT 38242
Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560
|| || | ||||| || | |||||| || | || ||| | || || ||| ||
Sbjct 38241 TTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGGCTGCGC 38182
Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620
|| ||||| || ||||| |||||||||||| || ||| | || || || || |||||
Sbjct 38181 AAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTGATGAGGGT 38122
Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680
|||| || |||||| |||| ||| || | ||| || || || ||
Sbjct 38121 CTGCACACCGACTTTGCTTGCCTGCTGTTCTCAC---ACCTGAACAACCGCCCCAGCAAG 38065
Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGAC 61740
|| | ||| |||| | ||| || || ||||| |||| || || || ||
Sbjct 38064 GACCTCGTGCAAAAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAG 38005
Query 61741 GCTTTGCCC----GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796
||| ||||| |||| || | || ||||| | || ||| ||| || |||||
Sbjct 38004 GCTCTGCCCTGTGGTCT-AC---TGGGAATGAACGCCGATCTGATGAAGCAATACATTGA 37949
Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856
|||||||| ||||| ||| | || | | | || | || | | || | | | ||
Sbjct 37948 GTTTGTTGCTGACCGCCTGCTTGTTGCTCTAGGCAACGAGAAGGTTTACCGTGCCACGAA 37889
Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916
||| || || |||||||| | || ||||| | |||||||| || || || ||||| ||
Sbjct 37888 CCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTGAGAAGCG 37829
Query 61917 TGTAGGCGACTATCA 61931
||| || ||||| ||
Sbjct 37828 TGTCGGTGACTACCA 37814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397564060722320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |