Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq532 129 1e-27 seq1213 107 5e-21 >seq532 Length=9364 Score = 129 bits (142), Expect = 1e-27 Identities = 257/377 (68%), Gaps = 29/377 (8%) Strand=Plus/Minus Query 50 GTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 109 || ||||||| | | |||||||||||||| |||||||| || ||| |||||||| Sbjct 8853 GTTGAGACAGTGTGAACGTCGTTACGCCATTCATGCAGGTCAAAAATTAATTGACAAGGA 8794 Query 110 ATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGA 169 ||||||||||||| | | ||||| |||||| | ||||||||| | ||||| || Sbjct 8793 ATTTCGCTACCTTTGAATCGTTACAGTTACGACTGCCGTTTACTGAGGCTT-----AA-- 8741 Query 170 GCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTA 229 ||| || || ||||| | || || | | |||| |||||||||||| | |||| Sbjct 8740 --ATCGGGT---CT--CCCCAAC-CTTCACTTATCAGCACTGGGCAGGCGTCAGAACCTA 8689 Query 230 TACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGG 289 ||| || ||| || || |||| |||||||||| |||||||||||| || | Sbjct 8688 TACATCATCTTACGATTTGGCAGGTCCCTGTGTTTTTGATAAACAGTCGCGATCACCAGT 8629 Query 290 TATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTC 349 | | | | || || | || | | ||| | | ||| |||||| Sbjct 8628 TTTGTGCCACTTACAAATGGTTGCCCA-AAAG----TAAGCCT---------TTCTTCTC 8583 Query 350 CCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGT 409 ||||||||||| ||||||| |||||||| | || ||||||| ||||| || Sbjct 8582 CCGAAGTTACGAAAGTATTTTGCCGAGTTCCTTAACTATCTTTATCTCAAGAGCCTTAGT 8523 Query 410 ATTCTCTACCCAACCAC 426 |||||||||||| |||| Sbjct 8522 ATTCTCTACCCATCCAC 8506 >seq1213 Length=116162 Score = 107 bits (118), Expect = 5e-21 Identities = 187/269 (70%), Gaps = 11/269 (4%) Strand=Plus/Plus Query 20 CACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCAT 79 ||| || | ||||| ||||||| ||| | |||||||| |||||||| ||| Sbjct 76870 CACTGCTAATTCAAGTTCACTGGGTCAATCTTAGAGACAGCTGTTGTATCGTTACATCAT 76929 Query 80 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTAC 139 || |||| | | | | ||| | | ||||| ||||||||||||||||||| | | |||| Sbjct 76930 TCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-CGTTAA 76988 Query 140 GGCCGCCGTTTACCGGGGCTTCGAT---CAAGAGCTTCGC----GTTAGCTAACCCCATC 192 ||||||| || ||||||| ||| | || | ||| | | ||| ||| Sbjct 76989 GGCCGCCATTAACCGGGGGTTCCGTCTACACTAAATTCCCTAAAAAAATTTAATTATATC 77048 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT---G 249 |||||| |||||||||||||| | |||||| ||||| | | || | ||| | Sbjct 77049 TGTTAACCAGCCGGCACCGGGCAGACATCACACTTTATACTTTGATTTAAATCTTTGACG 77108 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCG 278 || ||||||||||||| | |||||||||| Sbjct 77109 CAAAGTGCTGTGTTTTAATTAAACAGTCG 77137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260784706496