Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq532 129 1e-27
seq1213 107 5e-21
>seq532
Length=9364
Score = 129 bits (142), Expect = 1e-27
Identities = 257/377 (68%), Gaps = 29/377 (8%)
Strand=Plus/Minus
Query 50 GTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 109
|| ||||||| | | |||||||||||||| |||||||| || ||| ||||||||
Sbjct 8853 GTTGAGACAGTGTGAACGTCGTTACGCCATTCATGCAGGTCAAAAATTAATTGACAAGGA 8794
Query 110 ATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGA 169
||||||||||||| | | ||||| |||||| | ||||||||| | ||||| ||
Sbjct 8793 ATTTCGCTACCTTTGAATCGTTACAGTTACGACTGCCGTTTACTGAGGCTT-----AA-- 8741
Query 170 GCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTA 229
||| || || ||||| | || || | | |||| |||||||||||| | ||||
Sbjct 8740 --ATCGGGT---CT--CCCCAAC-CTTCACTTATCAGCACTGGGCAGGCGTCAGAACCTA 8689
Query 230 TACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGG 289
||| || ||| || || |||| |||||||||| |||||||||||| || |
Sbjct 8688 TACATCATCTTACGATTTGGCAGGTCCCTGTGTTTTTGATAAACAGTCGCGATCACCAGT 8629
Query 290 TATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTC 349
| | | | || || | || | | ||| | | ||| ||||||
Sbjct 8628 TTTGTGCCACTTACAAATGGTTGCCCA-AAAG----TAAGCCT---------TTCTTCTC 8583
Query 350 CCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGT 409
||||||||||| ||||||| |||||||| | || ||||||| ||||| ||
Sbjct 8582 CCGAAGTTACGAAAGTATTTTGCCGAGTTCCTTAACTATCTTTATCTCAAGAGCCTTAGT 8523
Query 410 ATTCTCTACCCAACCAC 426
|||||||||||| ||||
Sbjct 8522 ATTCTCTACCCATCCAC 8506
>seq1213
Length=116162
Score = 107 bits (118), Expect = 5e-21
Identities = 187/269 (70%), Gaps = 11/269 (4%)
Strand=Plus/Plus
Query 20 CACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCAT 79
||| || | ||||| ||||||| ||| | |||||||| |||||||| |||
Sbjct 76870 CACTGCTAATTCAAGTTCACTGGGTCAATCTTAGAGACAGCTGTTGTATCGTTACATCAT 76929
Query 80 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTAC 139
|| |||| | | | | ||| | | ||||| ||||||||||||||||||| | | ||||
Sbjct 76930 TCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-CGTTAA 76988
Query 140 GGCCGCCGTTTACCGGGGCTTCGAT---CAAGAGCTTCGC----GTTAGCTAACCCCATC 192
||||||| || ||||||| ||| | || | ||| | | ||| |||
Sbjct 76989 GGCCGCCATTAACCGGGGGTTCCGTCTACACTAAATTCCCTAAAAAAATTTAATTATATC 77048
Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT---G 249
|||||| |||||||||||||| | |||||| ||||| | | || | ||| |
Sbjct 77049 TGTTAACCAGCCGGCACCGGGCAGACATCACACTTTATACTTTGATTTAAATCTTTGACG 77108
Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCG 278
|| ||||||||||||| | ||||||||||
Sbjct 77109 CAAAGTGCTGTGTTTTAATTAAACAGTCG 77137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260784706496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |