Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq495 767 0.0
seq1044 215 2e-53
>seq495
Length=8336
Score = 767 bits (850), Expect = 0.0
Identities = 494/537 (92%), Gaps = 7/537 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2415 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 2474
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 2475 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 2534
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||||| |||||| ||| | | ||| |||| |||||| |||
Sbjct 2535 GGCCCGCGAAGGACCTTAACACCAGAAGTTGGACAG--AAGTCCAGCCCCGCTTA--TGA 2590
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||||| |||||||||||||||| |||||| |||||||| ||
Sbjct 2591 ATAAGTAAAAAAACAATAAGAGTAGTGGTATTTCACTGTTGCCGAA---GCTCCCACCTA 2647
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
|||||||||||| | ||| |||||| | ||| |||||||||||||||||||||||||||
Sbjct 2648 TTCTACACCTCTTATGTCTTTTCACCATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 2707
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2708 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATA 2767
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2768 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 2827
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 2828 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGTTTGAATTCCA 2887
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2888 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGCCAACACCACTTTCTG 2944
>seq1044
Length=681
Score = 215 bits (238), Expect = 2e-53
Identities = 183/224 (82%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383
||||| ||||| ||||||||| |||||||||| ||| |||||||||| | ||||||
Sbjct 178 CCAAGACCGTTGGCTTGGCTGTAATTTCGCTAGAGAGTGAGTAGGGACAGTAGAAATCTC 237
Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443
||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 238 GTTGATCCATTCATGCGCGTCACCAATTAAATGACGAGGCATTTGGTTACCTTAAGAGAG 297
Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTT-----GGTTGAATTTC-TTCACTTTGACA 497
||||||||||||||||||||||||||||||| | || || || ||| | ||
Sbjct 298 TCATAGTTACTCCCGCCGTTTACCCGCGCTTAAAAATGCTGTATGTCACTCAGAATAACT 357
Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTC 541
| ||||||||||||||||| |||| | || ||||| ||||
Sbjct 358 TGCAGAGCACTGGGCAGAATACACAATATGTTCACATCTATTTC 401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635180165024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |