Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq411 217 1e-51
seq101 212 5e-50
seq17 82.4 6e-11
>seq411
Length=11963
Score = 217 bits (240), Expect = 1e-51
Identities = 616/943 (65%), Gaps = 10/943 (1%)
Strand=Plus/Minus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
|||||||| |||||||| |||||||| ||||| | ||| ||||| || ||||||| |
Sbjct 7490 GGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATA 7431
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
|| || |||||||| || | ||| ||||| || | ||| | ||||| ||||||||
Sbjct 7430 ATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 7371
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
||||| || ||||| | ||| | || |||| |||||| || | ||| | |||
Sbjct 7370 TTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATG 7311
Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCAC---CGTACGTACCGC--CCTACCTTTGCGTTCGT 66236
|| | ||| || | ||||| || | | || ||||| || |||| ||||
Sbjct 7310 GCATACCACAGTTTCTGGGCCTTGACAACCATGCG-ACCGCGGCCCTCCTTC----TCGT 7256
Query 66237 AATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGT 66296
| | ||| || || || || ||| || | || | || | || || | |
Sbjct 7255 ACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCAT 7196
Query 66297 GTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTA 66356
|| ||||| || | ||| || ||| || || ||||| ||| || | || |
Sbjct 7195 TGGGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGA 7136
Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA 66416
|||| ||||| |||| || || || || || || || | ||||| || ||||| |
Sbjct 7135 TCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTA 7076
Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476
||||||||||||| |||| || ||||||||||| || || || ||||| || | ||
Sbjct 7075 AGTCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAG 7016
Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536
|| ||| ||||| ||||| || || || ||| |||||||| ||||| | ||| |
Sbjct 7015 GTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGG 6956
Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596
| |||| ||||| || | || || ||||| | ||| || || || || |||
Sbjct 6955 GAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATAC 6896
Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656
||||||||| ||||| |||||||| ||| |||| || || |||||| | |
Sbjct 6895 GGTGAACATTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 6836
Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716
| | | ||||| || ||| |||| |||| ||| | ||| | |||||| | |
Sbjct 6835 TATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACT 6776
Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776
| | | ||| || |||| ||||| || |||| ||||| || ||| | | || ||
Sbjct 6775 GAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAG 6716
Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836
|||| ||||| || || | ||| ||| | || || || ||| || | |||
Sbjct 6715 ACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAAATACCCACAGCAA 6656
Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896
||||| | | || || || || || || | | | | | | | | || ||| |
Sbjct 6655 CACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTACG 6596
Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939
| || || || ||||| | ||||||||| ||| ||||| ||
Sbjct 6595 AACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTC 6553
>seq101
Length=72697
Score = 212 bits (234), Expect = 5e-50
Identities = 560/850 (66%), Gaps = 10/850 (1%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || || ||||||||||| | |||||| | ||| |
Sbjct 41555 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 41496
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203
|| || || | | |||||| | ||| | | | || || | |||||
Sbjct 41495 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 41436
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
|| | | || |||||||| || || || || |||||||| || ||| | | || ||
Sbjct 41435 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCGC 41376
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323
||| | |||||||| | | ||||| || || |||||||| |||||||| |||
Sbjct 41375 TTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGATG 41316
Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383
|| || ||||||| || | ||| | || || || || ||||||| ||||| ||
Sbjct 41315 GAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCCTCG 41256
Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443
|||| | ||||||||||||| || || || || | || || || ||
Sbjct 41255 CAACGCACATACCTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGCCGAC 41196
Query 61444 TGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCAT 61501
||||| | || ||||||||| |||| | | || |||| | || | | || |
Sbjct 41195 TGGGCTCTGAAGTGGATCACC--GACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTGCCT 41138
Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561
|||| | |||||||| | |||||| || | || ||| | ||||| ||| || |
Sbjct 41137 TTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTGCGCA 41078
Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621
| ||||| || ||||| |||||||||||| || ||| | || || || || ||||||
Sbjct 41077 AGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAGGGCC 41018
Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681
|||| || |||||| |||| ||| ||| ||||| || || || |||
Sbjct 41017 TGCACACCGACTTTGCTTGCCTGCTGTTC--TCGC-ATCTGAACAACCGCCCCAGCAAGG 40961
Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741
| | |||| |||| | ||| || || ||||| |||| || ||||| || |
Sbjct 40960 ACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGG 40901
Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801
|| ||||| | || | || ||||| | || ||| |||||| ||||| ||||
Sbjct 40900 CTCTGCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTG 40841
Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCAT 61861
|||| ||||| || | || | | | || | || | | || | | | ||||||||
Sbjct 40840 TTGCTGACCGCCTACTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCAT 40781
Query 61862 TTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAG 61921
| || |||||||| | || ||||| | |||||||| || || || ||||| ||||| |
Sbjct 40780 TCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCG 40721
Query 61922 GCGACTATCA 61931
||||||| ||
Sbjct 40720 GCGACTACCA 40711
>seq17
Length=81907
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/191 (71%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 9159 TACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACGGACTATACG 9218
||||| || |||||||| |||||||| || ||| | ||| | || |||||||||
Sbjct 59176 TACGGCTTTCAGTGGCGCCATTTCGGGGCCGAGTATGTGGATGCCAAGACAGACTATACG 59235
Query 9219 GGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATATGAGCCGAGTA-- 9276
|| |||||||| |||||| |||| || || || || | ||| | | || |||
Sbjct 59236 GGTCAAGGTGTTGATCAGCTGGCTGAAGTCATCCA-CAAACTCAAGACCAACC-CGTACG 59293
Query 9277 GTCGACGCATGATTATGACTGCCTGGAATCCGAACGATTTGGACAAGATGGTATTGCCGC 9336
||| || || |||||||| || ||||| || |||||| | ||||||| |||| |
Sbjct 59294 ATCGGCGTATCATTATGACCGCTTGGAACCCTGCGGATTTGAAGAAGATGGCGCTGCCAC 59353
Query 9337 CATGCCATATG 9347
| ||||| |||
Sbjct 59354 CGTGCCACATG 59364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397562122578320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |