Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq411 217 1e-51 seq101 212 5e-50 seq17 82.4 6e-11 >seq411 Length=11963 Score = 217 bits (240), Expect = 1e-51 Identities = 616/943 (65%), Gaps = 10/943 (1%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 |||||||| |||||||| |||||||| ||||| | ||| ||||| || ||||||| | Sbjct 7490 GGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATA 7431 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || |||||||| || | ||| ||||| || | ||| | ||||| |||||||| Sbjct 7430 ATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 7371 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| || ||||| | ||| | || |||| |||||| || | ||| | ||| Sbjct 7370 TTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATG 7311 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCAC---CGTACGTACCGC--CCTACCTTTGCGTTCGT 66236 || | ||| || | ||||| || | | || ||||| || |||| |||| Sbjct 7310 GCATACCACAGTTTCTGGGCCTTGACAACCATGCG-ACCGCGGCCCTCCTTC----TCGT 7256 Query 66237 AATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGT 66296 | | ||| || || || || ||| || | || | || | || || | | Sbjct 7255 ACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCAT 7196 Query 66297 GTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTA 66356 || ||||| || | ||| || ||| || || ||||| ||| || | || | Sbjct 7195 TGGGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGA 7136 Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA 66416 |||| ||||| |||| || || || || || || || | ||||| || ||||| | Sbjct 7135 TCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTA 7076 Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476 ||||||||||||| |||| || ||||||||||| || || || ||||| || | || Sbjct 7075 AGTCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAG 7016 Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536 || ||| ||||| ||||| || || || ||| |||||||| ||||| | ||| | Sbjct 7015 GTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGG 6956 Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596 | |||| ||||| || | || || ||||| | ||| || || || || ||| Sbjct 6955 GAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATAC 6896 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656 ||||||||| ||||| |||||||| ||| |||| || || |||||| | | Sbjct 6895 GGTGAACATTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 6836 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 | | | ||||| || ||| |||| |||| ||| | ||| | |||||| | | Sbjct 6835 TATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACT 6776 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | | | ||| || |||| ||||| || |||| ||||| || ||| | | || || Sbjct 6775 GAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAG 6716 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836 |||| ||||| || || | ||| ||| | || || || ||| || | ||| Sbjct 6715 ACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAAATACCCACAGCAA 6656 Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896 ||||| | | || || || || || || | | | | | | | | || ||| | Sbjct 6655 CACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTACG 6596 Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | || || || ||||| | ||||||||| ||| ||||| || Sbjct 6595 AACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTC 6553 >seq101 Length=72697 Score = 212 bits (234), Expect = 5e-50 Identities = 560/850 (66%), Gaps = 10/850 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||||||||| | |||||| | ||| | Sbjct 41555 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 41496 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 || || || | | |||||| | ||| | | | || || | ||||| Sbjct 41495 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 41436 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || | | || |||||||| || || || || |||||||| || ||| | | || || Sbjct 41435 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCGC 41376 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | |||||||| | | ||||| || || |||||||| |||||||| ||| Sbjct 41375 TTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGATG 41316 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || || ||||||| || | ||| | || || || || ||||||| ||||| || Sbjct 41315 GAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCCTCG 41256 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 |||| | ||||||||||||| || || || || | || || || || Sbjct 41255 CAACGCACATACCTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGCCGAC 41196 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| | || ||||||||| |||| | | || |||| | || | | || | Sbjct 41195 TGGGCTCTGAAGTGGATCACC--GACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTGCCT 41138 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | |||||||| | |||||| || | || ||| | ||||| ||| || | Sbjct 41137 TTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTGCGCA 41078 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| || ||||| |||||||||||| || ||| | || || || || |||||| Sbjct 41077 AGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAGGGCC 41018 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681 |||| || |||||| |||| ||| ||| ||||| || || || ||| Sbjct 41017 TGCACACCGACTTTGCTTGCCTGCTGTTC--TCGC-ATCTGAACAACCGCCCCAGCAAGG 40961 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 | | |||| |||| | ||| || || ||||| |||| || ||||| || | Sbjct 40960 ACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGG 40901 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 || ||||| | || | || ||||| | || ||| |||||| ||||| |||| Sbjct 40900 CTCTGCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTG 40841 Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCAT 61861 |||| ||||| || | || | | | || | || | | || | | | |||||||| Sbjct 40840 TTGCTGACCGCCTACTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCAT 40781 Query 61862 TTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAG 61921 | || |||||||| | || ||||| | |||||||| || || || ||||| ||||| | Sbjct 40780 TCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCG 40721 Query 61922 GCGACTATCA 61931 ||||||| || Sbjct 40720 GCGACTACCA 40711 >seq17 Length=81907 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 9159 TACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACGGACTATACG 9218 ||||| || |||||||| |||||||| || ||| | ||| | || ||||||||| Sbjct 59176 TACGGCTTTCAGTGGCGCCATTTCGGGGCCGAGTATGTGGATGCCAAGACAGACTATACG 59235 Query 9219 GGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATATGAGCCGAGTA-- 9276 || |||||||| |||||| |||| || || || || | ||| | | || ||| Sbjct 59236 GGTCAAGGTGTTGATCAGCTGGCTGAAGTCATCCA-CAAACTCAAGACCAACC-CGTACG 59293 Query 9277 GTCGACGCATGATTATGACTGCCTGGAATCCGAACGATTTGGACAAGATGGTATTGCCGC 9336 ||| || || |||||||| || ||||| || |||||| | ||||||| |||| | Sbjct 59294 ATCGGCGTATCATTATGACCGCTTGGAACCCTGCGGATTTGAAGAAGATGGCGCTGCCAC 59353 Query 9337 CATGCCATATG 9347 | ||||| ||| Sbjct 59354 CGTGCCACATG 59364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562122578320