Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_034209.1 Length=3170 Score E Sequences producing significant alignments: (Bits) Value seq558 340 4e-90 >seq558 Length=4308 Score = 340 bits (376), Expect = 4e-90 Identities = 394/526 (75%), Gaps = 4/526 (1%) Strand=Plus/Minus Query 449 GACGACGAGCTCGGCCTCGTCGACCCACTCGACGAGACGGCGGGGAAATTCCGACTGGCT 508 ||||| || ||| |||||||| ||| | ||| | ||| || ||||||||||| ||| Sbjct 3829 GACGAGGATCTCAATCTCGTCGATCCATTAGACACGGCGGGAGGCAAATTCCGACTCGCT 3770 Query 509 GCTAAATCAGTCTTTCTGACCTACCCCAAGTGTCACC-TCGA-CAAGGAGGTGTTCGTCA 566 || ||||| ||||| || || ||||||| ||| ||| |||| | | | | ||||| | Sbjct 3769 GCCAAATCTGTCTTCCTCACATACCCCAGGTG-CACTATCGAACTAACAA-TCTTCGTTA 3712 Query 567 AGGCGATCGAGAAATTCAAGTTCGATCAGTTCTACGCTGTGCGCGAAGATCACAAGGACG 626 | || |||| |||||||| || || || |||||||| || | |||||||||||||| Sbjct 3711 AAGCACTCGAAAAATTCAACTTTGACCAATTCTACGCGGTCAGAAAAGATCACAAGGACA 3652 Query 627 GCACCCCCCACTATCACGTGATAGGAGAGTGGTCAGTCAAGAAGAACATCAAGAACCCCC 686 | |||| | |||| ||||| ||||| |||||| | || || || ||||| || || | Sbjct 3651 GTACCCTCTACTACCACGTAATAGGGGAGTGGGCTACTAAAAAAAATATCAAAAATCCGC 3592 Query 687 GCCACTTCGACATCCAGAAGTACCACCCGAACATCGGGAGGACTCGGAACAGGCTAGCTG 746 || | ||| | ||| | |||||| | || |||||| | || |||||||| || |||| Sbjct 3591 GCTATTTCAATATCTTGGGTTACCACTCTAATATCGGGCGTACCCGGAACAGACTTGCTG 3532 Query 747 CCTGGAGATACGTCCACAAAACCAAAGGACGCTCAACGCACGTCGGCGGCGACATGCCAG 806 |||||||||||||||||||||| |||||||| |||| ||||| | || | ||||||| Sbjct 3531 CCTGGAGATACGTCCACAAAACAAAAGGACGATCAATATACGTCAGAGGACAGATGCCAG 3472 Query 807 AACCTGTCGGCATCCGAAAGGAAGCCAAGGACGACTTCTGGAAAGAAGCTGTCACCATCA 866 |||| ||| || |||| |||| ||| ||||| |||||||||||| ||| ||||| | Sbjct 3471 AACCCCGGGGCCTCAGAAAAGAAGTCAAAGACGATTTCTGGAAAGAAATTGTTACCATTA 3412 Query 867 AGGACCGGAACACGTTCATCTCGAGATTCCGCCAAGAGGCCCCAAGGGACCTCATTGTAC 926 | ||| | || | ||||| ||| | |||||| | ||||||| | || ||| | || Sbjct 3411 ACGACTGCAAAAATTTCATATCGCGTTTCCGCAATAAGGCCCCCCGCGATCTCGTCCTAT 3352 Query 927 ACTACTCCAACGTCAAAGCATACGCAGACGATGAGTTCAAAGTGGA 972 |||| ||||| ||||||||||||| ||||| | ||| ||||| || Sbjct 3351 ACTATTCCAATATCAAAGCATACGCGGACGACGCGTTTAAAGTAGA 3306 Score = 183 bits (202), Expect = 6e-43 Identities = 393/588 (67%), Gaps = 22/588 (4%) Strand=Plus/Minus Query 1243 ATAGCTCGACCGAAATCACTGTGCCTGTACGGCGAAACAAGACTGTACAAAACAATTTGG 1302 ||||| ||||| |||||| | ||||| ||||| ||| | || | || |||||||||||| Sbjct 3074 ATAGCCCGACCAAAATCATTCTGCCTTTACGGTAAAATACGAATATATAAAACAATTTGG 3015 Query 1303 GCACGAAGTCTGGGACCCCACTCTTACATGAGTGGATGTTGGAATGCGAGACTGCTCGAC 1362 | ||||| | | | || | | ||| || ||||||| |||||||||||| ||| | || Sbjct 3014 GTACGAACTATTGTACTATATTGTTATATAAGTGGATATTGGAATGCGAGTCTGATAGAT 2955 Query 1363 GACGACAAGCAGTATGTCGTGATTGATGACGTGCCCTTGGATGACAAGGACATGTTCAAG 1422 | ||||| ||||| |||| ||||| || | ||||| ||| || || || || ||| Sbjct 2954 AAGGACAAAAAGTATATCGTTATTGACGATATACCCTTAAGTGATAAAGATATATTGAAG 2895 Query 1423 CATTTCAAGCAAATGCTCGGGTGCCAGAATAATTTTTCTGTGACGGACAAGTACGTCAAG 1482 |||| ||| |||| || |||| ||| ||||| || ||| | || |||||||| | Sbjct 2894 CATTACAAATAAATTCTTGGGTACCAAAATAACTTCTCTATTACAGACAAGTATTTGCGC 2835 Query 1483 AAGTTGCACTTCGCGAAGTGGGGGCTGCCATGCATTTACTTGGCCAACCAAGACCCCAGG 1542 || |||| || || ||||| || || ||||| ||||| | ||||| ||| | || Sbjct 2834 AAAATGCATTTTGCAGCATGGGGACTACCTTGCATCTACTTATCGAACCAGGACTTCCGG 2775 Query 1543 GAGTACAGCACCATAGACGGGACCCACCGTAGA-TGGTTGAACGGAAATTGTGTTTTTGT 1601 || || | || | ||| |||| ||| || | ||||| | | | || || Sbjct 2774 GAATATA-----ATGGGGTGGA-----TATAGATTGGCTGGAAGGAAACTATATATTCGT 2725 Query 1602 CGAAGTAGAAAAACCCCTGTTCGTAGCTTCATCGGGTCCGGGTACACCGGACTCAAGACA 1661 | || |||||| || |||||| | | || | |||| | ||| |||| | || | Sbjct 2724 AAAGGTTACAAAACCACTATTCGTACCAACTTCCGCGTCGGGAATACCCGACTTACGATA 2665 Query 1662 GGAACACCTGTCTCAATTTTTACAAGAAGCAGAGCAAGACGAAAGCTTTTAAACAATAAA 1721 ||| |||| |||||| | | || ||| | ||| | || |||||| Sbjct 2664 CGAATACCTTATACAATTTCTCGAGGATATAGAAAACGACAATAGTTTTTAA-------- 2613 Query 1722 AATTTCATTCTCGCCAATACAACGCTGAACTAATGTTCCTCATCTCAATAGCAGGAACAG 1781 || | | ||||||||| || ||| || | || | || ||| ||| |||||| Sbjct 2612 ---TTTACTATCGCCAATATAATATAGAAAATATATCCCGTACCTTAATCGCAAGAACAG 2556 Query 1782 CAACACCTTTCCTATCCAGAATAATCGTAGAGGCCTCAGACTCAGCAG 1829 || |||| | ||| |||||||||||| |||||||| ||| || Sbjct 2555 GTACTGAATTCCGACCCAAAATAATCGTAGACGCCTCAGAAGCAGAAG 2508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 10031895322350