Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14]
954 sequences; 42,624,563 total letters
Query= NC_034209.1
Length=3170
Score E
Sequences producing significant alignments: (Bits) Value
seq558 340 4e-90
>seq558
Length=4308
Score = 340 bits (376), Expect = 4e-90
Identities = 394/526 (75%), Gaps = 4/526 (1%)
Strand=Plus/Minus
Query 449 GACGACGAGCTCGGCCTCGTCGACCCACTCGACGAGACGGCGGGGAAATTCCGACTGGCT 508
||||| || ||| |||||||| ||| | ||| | ||| || ||||||||||| |||
Sbjct 3829 GACGAGGATCTCAATCTCGTCGATCCATTAGACACGGCGGGAGGCAAATTCCGACTCGCT 3770
Query 509 GCTAAATCAGTCTTTCTGACCTACCCCAAGTGTCACC-TCGA-CAAGGAGGTGTTCGTCA 566
|| ||||| ||||| || || ||||||| ||| ||| |||| | | | | ||||| |
Sbjct 3769 GCCAAATCTGTCTTCCTCACATACCCCAGGTG-CACTATCGAACTAACAA-TCTTCGTTA 3712
Query 567 AGGCGATCGAGAAATTCAAGTTCGATCAGTTCTACGCTGTGCGCGAAGATCACAAGGACG 626
| || |||| |||||||| || || || |||||||| || | ||||||||||||||
Sbjct 3711 AAGCACTCGAAAAATTCAACTTTGACCAATTCTACGCGGTCAGAAAAGATCACAAGGACA 3652
Query 627 GCACCCCCCACTATCACGTGATAGGAGAGTGGTCAGTCAAGAAGAACATCAAGAACCCCC 686
| |||| | |||| ||||| ||||| |||||| | || || || ||||| || || |
Sbjct 3651 GTACCCTCTACTACCACGTAATAGGGGAGTGGGCTACTAAAAAAAATATCAAAAATCCGC 3592
Query 687 GCCACTTCGACATCCAGAAGTACCACCCGAACATCGGGAGGACTCGGAACAGGCTAGCTG 746
|| | ||| | ||| | |||||| | || |||||| | || |||||||| || ||||
Sbjct 3591 GCTATTTCAATATCTTGGGTTACCACTCTAATATCGGGCGTACCCGGAACAGACTTGCTG 3532
Query 747 CCTGGAGATACGTCCACAAAACCAAAGGACGCTCAACGCACGTCGGCGGCGACATGCCAG 806
|||||||||||||||||||||| |||||||| |||| ||||| | || | |||||||
Sbjct 3531 CCTGGAGATACGTCCACAAAACAAAAGGACGATCAATATACGTCAGAGGACAGATGCCAG 3472
Query 807 AACCTGTCGGCATCCGAAAGGAAGCCAAGGACGACTTCTGGAAAGAAGCTGTCACCATCA 866
|||| ||| || |||| |||| ||| ||||| |||||||||||| ||| ||||| |
Sbjct 3471 AACCCCGGGGCCTCAGAAAAGAAGTCAAAGACGATTTCTGGAAAGAAATTGTTACCATTA 3412
Query 867 AGGACCGGAACACGTTCATCTCGAGATTCCGCCAAGAGGCCCCAAGGGACCTCATTGTAC 926
| ||| | || | ||||| ||| | |||||| | ||||||| | || ||| | ||
Sbjct 3411 ACGACTGCAAAAATTTCATATCGCGTTTCCGCAATAAGGCCCCCCGCGATCTCGTCCTAT 3352
Query 927 ACTACTCCAACGTCAAAGCATACGCAGACGATGAGTTCAAAGTGGA 972
|||| ||||| ||||||||||||| ||||| | ||| ||||| ||
Sbjct 3351 ACTATTCCAATATCAAAGCATACGCGGACGACGCGTTTAAAGTAGA 3306
Score = 183 bits (202), Expect = 6e-43
Identities = 393/588 (67%), Gaps = 22/588 (4%)
Strand=Plus/Minus
Query 1243 ATAGCTCGACCGAAATCACTGTGCCTGTACGGCGAAACAAGACTGTACAAAACAATTTGG 1302
||||| ||||| |||||| | ||||| ||||| ||| | || | || ||||||||||||
Sbjct 3074 ATAGCCCGACCAAAATCATTCTGCCTTTACGGTAAAATACGAATATATAAAACAATTTGG 3015
Query 1303 GCACGAAGTCTGGGACCCCACTCTTACATGAGTGGATGTTGGAATGCGAGACTGCTCGAC 1362
| ||||| | | | || | | ||| || ||||||| |||||||||||| ||| | ||
Sbjct 3014 GTACGAACTATTGTACTATATTGTTATATAAGTGGATATTGGAATGCGAGTCTGATAGAT 2955
Query 1363 GACGACAAGCAGTATGTCGTGATTGATGACGTGCCCTTGGATGACAAGGACATGTTCAAG 1422
| ||||| ||||| |||| ||||| || | ||||| ||| || || || || |||
Sbjct 2954 AAGGACAAAAAGTATATCGTTATTGACGATATACCCTTAAGTGATAAAGATATATTGAAG 2895
Query 1423 CATTTCAAGCAAATGCTCGGGTGCCAGAATAATTTTTCTGTGACGGACAAGTACGTCAAG 1482
|||| ||| |||| || |||| ||| ||||| || ||| | || |||||||| |
Sbjct 2894 CATTACAAATAAATTCTTGGGTACCAAAATAACTTCTCTATTACAGACAAGTATTTGCGC 2835
Query 1483 AAGTTGCACTTCGCGAAGTGGGGGCTGCCATGCATTTACTTGGCCAACCAAGACCCCAGG 1542
|| |||| || || ||||| || || ||||| ||||| | ||||| ||| | ||
Sbjct 2834 AAAATGCATTTTGCAGCATGGGGACTACCTTGCATCTACTTATCGAACCAGGACTTCCGG 2775
Query 1543 GAGTACAGCACCATAGACGGGACCCACCGTAGA-TGGTTGAACGGAAATTGTGTTTTTGT 1601
|| || | || | ||| |||| ||| || | ||||| | | | || ||
Sbjct 2774 GAATATA-----ATGGGGTGGA-----TATAGATTGGCTGGAAGGAAACTATATATTCGT 2725
Query 1602 CGAAGTAGAAAAACCCCTGTTCGTAGCTTCATCGGGTCCGGGTACACCGGACTCAAGACA 1661
| || |||||| || |||||| | | || | |||| | ||| |||| | || |
Sbjct 2724 AAAGGTTACAAAACCACTATTCGTACCAACTTCCGCGTCGGGAATACCCGACTTACGATA 2665
Query 1662 GGAACACCTGTCTCAATTTTTACAAGAAGCAGAGCAAGACGAAAGCTTTTAAACAATAAA 1721
||| |||| |||||| | | || ||| | ||| | || ||||||
Sbjct 2664 CGAATACCTTATACAATTTCTCGAGGATATAGAAAACGACAATAGTTTTTAA-------- 2613
Query 1722 AATTTCATTCTCGCCAATACAACGCTGAACTAATGTTCCTCATCTCAATAGCAGGAACAG 1781
|| | | ||||||||| || ||| || | || | || ||| ||| ||||||
Sbjct 2612 ---TTTACTATCGCCAATATAATATAGAAAATATATCCCGTACCTTAATCGCAAGAACAG 2556
Query 1782 CAACACCTTTCCTATCCAGAATAATCGTAGAGGCCTCAGACTCAGCAG 1829
|| |||| | ||| |||||||||||| |||||||| ||| ||
Sbjct 2555 GTACTGAATTCCGACCCAAAATAATCGTAGACGCCTCAGAAGCAGAAG 2508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 10031895322350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |