Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2590 830 0.0 seq2066 174 7e-41 seq1831 140 1e-30 seq1743 80.6 1e-12 >seq2590 Length=12849 Score = 830 bits (920), Expect = 0.0 Identities = 586/664 (88%), Gaps = 7/664 (1%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| || Sbjct 6547 TGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATAT 6606 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6607 TTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 6666 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 6667 TGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTT 6726 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCC--CCTCGGCCGGTGCACT-CTTCTGC 259 |||| ||||||||| | || | ||| | || | || || ||| ||| | || Sbjct 6727 GCAATCAGACTTGCACTTGGT-GTTCATCGGGGAGTCATC--CCCGTGTACTTCATCAA- 6782 Query 260 GGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319 | ||||||||||||||| | ||| ||| ||||||||| | ||||||||||| ||||| Sbjct 6783 GTTCAGGCCAGCATCAGTTTGGGTGGTTAGATAAAGGCTTAGAGAATGTGGCCCTCTTCG 6842 Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379 |||||||||||||| | |||| |||| ||| |||||||||||| ||||||| ||||| Sbjct 6843 GGGGGTGTTATAGCTCTAGGTGCAATGTAGCCTACCTGGACTGAGGACCGCGCTTCGGCT 6902 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || | Sbjct 6903 AGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTGTACC 6962 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 ||||||||||||||||||| |||||| | ||||||||||||||||||| |||| || Sbjct 6963 TAATATGCGAGTGTTTGGGTGTTAAACCCATACGCGTAATGAAAGTGAACGCTGGTGAGA 7022 Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559 |||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 7023 ACCCTTAAGGGTGCATCATCGACCGATCTTGATGTCTTCGGATGGATTTGAGTAAGAGCA 7082 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 || | || ||||||||||||||||| |||| | ||||||||||||||||||||||||| Sbjct 7083 TATTGGGTGCGACCCGAAAGATGGTGATCTATACGTGAATAGGGTGAAGCCAGAGGAAAC 7142 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 7143 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGG 7202 Query 680 GCGA 683 |||| Sbjct 7203 GCGA 7206 >seq2066 Length=74417 Score = 174 bits (192), Expect = 7e-41 Identities = 147/177 (83%), Gaps = 9/177 (5%) Strand=Plus/Plus Query 516 CATCGACCG-ATCCTGATGTCTTCGGATGGATTTGA-GTAAGAGCATAGCTGTTGGGACC 573 |||||||| ||| ||| ||||||||| ||||| | ||||||||| | | |||| Sbjct 53026 CATCGACCCCATCAAGATATCTTCGGATAGATTTTTCGCAAGAGCATATTAGGCGCGACC 53085 Query 574 CGAAAGATG-GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 53086 CGAAAGATGTGTGAACTATACGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 53145 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGA------TCGTCAAATTTGGGTATAGGGGCGA 683 | ||||| ||||| |||||||||||| |||||||||||| ||| |||||||| Sbjct 53146 CCCAGCGATTCTGACGTGCAAATCGACATCGGTCGTCAAATTTGCGTACAGGGGCGA 53202 >seq1831 Length=35741 Score = 140 bits (154), Expect = 1e-30 Identities = 194/268 (72%), Gaps = 23/268 (9%) Strand=Plus/Minus Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477 ||||||||| ||| || || | ||| |||| ||||| | || | || |||||| Sbjct 12244 AACACGGACGAAGTGGTGTACCTACTACGCGAATGTTTACGCCATAAGTCTGTACGCGTA 12185 Query 478 ATGAAAGTGAACGGAGGTGGGAACC-CGTGA----GGGTGCACCATCGACCGATCCTGAT 532 | ||||||||||||||||| || | | ||| || |||| | |||||| | ||||| Sbjct 12184 AGGAAAGTGAACGGAGGTGAGAGCTTCTTGATTAAGGATGCATCCTCGACCAGTGCTGAT 12125 Query 533 GTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG--ACCCGAAAGATG-GTGAACT 589 |||||||||| |||| | | || || | ||| |||||||||||| ||||||| Sbjct 12124 GTCTTCGGAT----TTGAAAAGGGGC---GCATTGGGGTCACCCGAAAGATGAGTGAACT 12072 Query 590 ATGCCTGAATAGGGTGAA--------GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 | ||||||||||||| || |||| ||||||||||||||||||| ||||| Sbjct 12071 GGACATGAATAGGGTGAAACACTGAAGCGAGAGTAAACTCTGGTGGAGGCTCGTGGCGGT 12012 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTT 669 | || ||| |||| ||| ||||||||| Sbjct 12011 TATGAGGTGAAAATTGATGGTCAAATTT 11984 >seq1743 Length=40480 Score = 80.6 bits (88), Expect = 1e-12 Identities = 69/84 (82%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 375 CGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGT 434 |||||| || |||||||||||||||||||| | | |||| | |||||||||| | |||| Sbjct 24772 CGGCTATGAAGCTGGCGTAATGGTTGTAAGTGACAGGTCTAGAAACACGGACCGAAGAGT 24713 Query 435 CTAACATCTATGCGAGTGTTTGGG 458 || | || |||||||||||||| Sbjct 24712 GTAGTA-CTCTGCGAGTGTTTGGG 24690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079944144200