Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05]
2,604 sequences; 40,732,201 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq2590 830 0.0
seq2066 174 7e-41
seq1831 140 1e-30
seq1743 80.6 1e-12
>seq2590
Length=12849
Score = 830 bits (920), Expect = 0.0
Identities = 586/664 (88%), Gaps = 7/664 (1%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
|||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 6547 TGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATAT 6606
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6607 TTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 6666
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 6667 TGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTT 6726
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCC--CCTCGGCCGGTGCACT-CTTCTGC 259
|||| ||||||||| | || | ||| | || | || || ||| ||| | ||
Sbjct 6727 GCAATCAGACTTGCACTTGGT-GTTCATCGGGGAGTCATC--CCCGTGTACTTCATCAA- 6782
Query 260 GGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319
| ||||||||||||||| | ||| ||| ||||||||| | ||||||||||| |||||
Sbjct 6783 GTTCAGGCCAGCATCAGTTTGGGTGGTTAGATAAAGGCTTAGAGAATGTGGCCCTCTTCG 6842
Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379
|||||||||||||| | |||| |||| ||| |||||||||||| ||||||| |||||
Sbjct 6843 GGGGGTGTTATAGCTCTAGGTGCAATGTAGCCTACCTGGACTGAGGACCGCGCTTCGGCT 6902
Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |
Sbjct 6903 AGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTGTACC 6962
Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499
||||||||||||||||||| |||||| | ||||||||||||||||||| |||| ||
Sbjct 6963 TAATATGCGAGTGTTTGGGTGTTAAACCCATACGCGTAATGAAAGTGAACGCTGGTGAGA 7022
Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559
|||| | |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 7023 ACCCTTAAGGGTGCATCATCGACCGATCTTGATGTCTTCGGATGGATTTGAGTAAGAGCA 7082
Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619
|| | || ||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 7083 TATTGGGTGCGACCCGAAAGATGGTGATCTATACGTGAATAGGGTGAAGCCAGAGGAAAC 7142
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 7143 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGG 7202
Query 680 GCGA 683
||||
Sbjct 7203 GCGA 7206
>seq2066
Length=74417
Score = 174 bits (192), Expect = 7e-41
Identities = 147/177 (83%), Gaps = 9/177 (5%)
Strand=Plus/Plus
Query 516 CATCGACCG-ATCCTGATGTCTTCGGATGGATTTGA-GTAAGAGCATAGCTGTTGGGACC 573
|||||||| ||| ||| ||||||||| ||||| | ||||||||| | | ||||
Sbjct 53026 CATCGACCCCATCAAGATATCTTCGGATAGATTTTTCGCAAGAGCATATTAGGCGCGACC 53085
Query 574 CGAAAGATG-GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632
||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 53086 CGAAAGATGTGTGAACTATACGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 53145
Query 633 CGCAGCGGTTCTGGCGTGCAAATCGA------TCGTCAAATTTGGGTATAGGGGCGA 683
| ||||| ||||| |||||||||||| |||||||||||| ||| ||||||||
Sbjct 53146 CCCAGCGATTCTGACGTGCAAATCGACATCGGTCGTCAAATTTGCGTACAGGGGCGA 53202
>seq1831
Length=35741
Score = 140 bits (154), Expect = 1e-30
Identities = 194/268 (72%), Gaps = 23/268 (9%)
Strand=Plus/Minus
Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477
||||||||| ||| || || | ||| |||| ||||| | || | || ||||||
Sbjct 12244 AACACGGACGAAGTGGTGTACCTACTACGCGAATGTTTACGCCATAAGTCTGTACGCGTA 12185
Query 478 ATGAAAGTGAACGGAGGTGGGAACC-CGTGA----GGGTGCACCATCGACCGATCCTGAT 532
| ||||||||||||||||| || | | ||| || |||| | |||||| | |||||
Sbjct 12184 AGGAAAGTGAACGGAGGTGAGAGCTTCTTGATTAAGGATGCATCCTCGACCAGTGCTGAT 12125
Query 533 GTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG--ACCCGAAAGATG-GTGAACT 589
|||||||||| |||| | | || || | ||| |||||||||||| |||||||
Sbjct 12124 GTCTTCGGAT----TTGAAAAGGGGC---GCATTGGGGTCACCCGAAAGATGAGTGAACT 12072
Query 590 ATGCCTGAATAGGGTGAA--------GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641
| ||||||||||||| || |||| ||||||||||||||||||| |||||
Sbjct 12071 GGACATGAATAGGGTGAAACACTGAAGCGAGAGTAAACTCTGGTGGAGGCTCGTGGCGGT 12012
Query 642 TCTGGCGTGCAAATCGATCGTCAAATTT 669
| || ||| |||| ||| |||||||||
Sbjct 12011 TATGAGGTGAAAATTGATGGTCAAATTT 11984
>seq1743
Length=40480
Score = 80.6 bits (88), Expect = 1e-12
Identities = 69/84 (82%), Gaps = 1/84 (1%)
Strand=Plus/Minus
Query 375 CGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGT 434
|||||| || |||||||||||||||||||| | | |||| | |||||||||| | ||||
Sbjct 24772 CGGCTATGAAGCTGGCGTAATGGTTGTAAGTGACAGGTCTAGAAACACGGACCGAAGAGT 24713
Query 435 CTAACATCTATGCGAGTGTTTGGG 458
|| | || ||||||||||||||
Sbjct 24712 GTAGTA-CTCTGCGAGTGTTTGGG 24690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079944144200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |