Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2590 273 3e-71 >seq2590 Length=12849 Score = 273 bits (302), Expect = 3e-71 Identities = 180/198 (91%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 4808 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 4750 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 |||| ||| || |||||||||||||||||||||||||||||||||||| ||||| Sbjct 4749 GACCAGCCAAAGCTAGCCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 4690 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 4689 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 4630 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 4629 AAGAGCTCTCAATCTGTC 4612 Score = 98.7 bits (108), Expect = 2e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5207 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 5149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796779899724