Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05]
2,604 sequences; 40,732,201 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq2590 370 3e-100
>seq2590
Length=12849
Score = 370 bits (410), Expect = 3e-100
Identities = 257/291 (88%), Gaps = 3/291 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9880 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 9821
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 9820 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 9761
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||| || |||| ||| | ||| |||||||||||| |||||
Sbjct 9760 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 9701
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||||||||||||||||||||||||| || || |||||||| ||
Sbjct 9700 ATAAGTAAAAAAACGATAAGGGTAGTGGTATTTCAC---CGGCGCTTGCGCTCCCACCTA 9644
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297
||||||||| | | ||| |||||||| ||| ||||||||||||||||||
Sbjct 9643 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAAC 9593
Score = 250 bits (276), Expect = 8e-64
Identities = 143/145 (99%), Gaps = 1/145 (1%)
Strand=Plus/Minus
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 9292 AGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 9233
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTC-ATGCGCGTCACTAATTAGATG 416
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 9232 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAATGCGCGTCACTAATTAGATG 9173
Query 417 ACGAGGCATTTGGCTACCTTAAGAG 441
|||||||||||||||||||||||||
Sbjct 9172 ACGAGGCATTTGGCTACCTTAAGAG 9148
Score = 178 bits (196), Expect = 4e-42
Identities = 101/103 (98%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 8841 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 8782
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 8781 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 8739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635157419392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |