Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1009 291 6e-74 >seq1009 Length=94825 Score = 291 bits (322), Expect = 6e-74 Identities = 1210/1880 (64%), Gaps = 52/1880 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| ||||| || || | | || ||| |||| | ||||||||||| ||||| Sbjct 24300 ATCGACGGTGAATTGAATAGGTGCCGAGGCAGCCATGGTACGTAGATAGTACATTCCGGT 24241 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 ||| | || |||| || |||||||| |||| |||| || | | | | || | Sbjct 24240 CTTCAAACCCAATTTCCAACCAGCAAAATGCATAGATG-TAATCTTACCCATTGTAGGAT 24182 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| || ||| |||||||| | ||||||||| ||||||| Sbjct 24181 CCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCA 24122 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || || ||| || || ||||| ||||||||||| || | | | | ||| Sbjct 24121 TTTGAACAATTGTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGA-GCCTTGATGTCA 24063 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 |||||| | |||| |||| || |||| | ||||| || || || ||| Sbjct 24062 GCTGGAATATTGGGGATGTTTTGGATGGATCCACCATCAGCAATGATACGGTTCTTCATG 24003 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTT---GAACCAAGTGACGATTGATGACT 65431 || ||||| | ||||| ||||| ||| | || ||| | | || |||| | |||| Sbjct 24002 TTGTCAGACCAGAGACCCATATCGACAAGGTCTTTGAGAAGCCA-TG--GATTAACGACT 23946 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 ||||| || |||| || ||||||||| |||||||| || ||| ||||| || || Sbjct 23945 TGGAATTCTCCGGCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACAT 23886 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 ||| || ||| |||||||||| || ||||| |||||||| || || | | ||| Sbjct 23885 TCATTGAAGCCAAGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAG 23826 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTT 65609 || || | ||||| | ||| || ||| |||||| | ||||| || || Sbjct 23825 TTACGGATTCCGTGTTGCTTGATGGATTGCTTCAAGGAGTCCCAATCCCACAAATCAGTA 23766 Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAAC 65669 | || ||| || |||||||| | ||| || ||| | | | || || | Sbjct 23765 GGT-GTA-ACACCC------CACATATCATATTGGAGTTCTCCCTTCGAGACTGGAGAGC 23714 Query 65670 CGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTT-GACAGCTGGTCTCGAGTGCG 65728 | | || | ||||| || ||||| |||| | ||| | || || || ||| Sbjct 23713 CTTGATAAGTGTCGTATGGGCCAAGTTCCTTTGCAATCTCGACGGATGAGGTCAAG-GCG 23655 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCT--CATC---GCTCT 65783 || || || ||||||||||| | ||| ||| | |||| | | || | | Sbjct 23654 GCGTGGTAGATAGTCTCGAAAATTTG--GAT---GTTGAGGTGCTTGGCTTCTGGGGAGT 23600 Query 65784 CGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGG 65843 || | || | || | | |||| || || ||||||||||| || | | |||| | Sbjct 23599 CGAATGGAAGACGAAGAGCCAAGAAAGCATCAGCAAGACCTTGAACACCGACAGCGATAG 23540 Query 65844 GACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAA 65903 | | ||| || |||||| ||| || || | || || ||||||||||| || || | Sbjct 23539 GTCTATGTCGGAAATTGCTCTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGA 23480 Query 65904 TGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAA 65962 | ||||| || | || || || || | ||| | | | || ||| ||| || Sbjct 23479 TCTTGTTCAAGTTTCTAACAACAACCTGAACAACCTCGT-GAAGCTTTTGGAAGTCATAA 23421 Query 65963 TGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGG 66022 || | || | || || || |||| || | | | ||| || | | Sbjct 23420 G--TTCCCTCATTCATGT-TGACG--------AATGTTGGCAAAG-CGATAGAAGCCAAG 23373 Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 || ||| ||| | ||| || || || | ||||| || ||||| ||||||| || | Sbjct 23372 TTACAGCAAGCAACCTCATCTGGTGCAGAGTACTCCACGATTTCTGTGCACAAGTTGGAG 23313 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 | || || || || | |||| ||| || ||||| ||||||||||| ||||| | | Sbjct 23312 CTTCGAATAGTACCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGC 23253 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCC 66202 ||| | ||| | |||||||| ||| | || | || | || |||||| | ||| Sbjct 23252 ATGAAAGGATTTCCGGTCTCGGTTTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCC 23193 Query 66203 TTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGA 66261 || | || | | | |||| | | | | |||||| |||||||| ||||| Sbjct 23192 TTGATAGT-CTTGCGACCCTTGCCTGCCTTCTCGTAACCCTCGTAGAGAGCCTCGAACTC 23134 Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||||| | || || | || | |||||| | || || ||||| || | ||| || || Sbjct 23133 CTCACCATAAACATCTGCCAAGCCTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCC 23074 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 | || ||| || || ||| ||||||||||| ||||| | |||||||||||||||||| Sbjct 23073 GTTCTTTTCAACTCGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCG 23014 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 ||| || || || | || ||||| || || | || |||||||| || | || || Sbjct 23013 TGCACGAACTTCTTCCTTACCATGATTCTTACGTAGATCAAGGAACTCGAAAACATCCGC 22954 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 ||||||||| || ||||| | || || | || ||| ||| ||||||||||| || Sbjct 22953 ATGCCATGGCTCAAGGTAAACAGCAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAAC 22894 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 || | || |||||||| || || | ||| || || | |||||||| || ||||| Sbjct 22893 ATATCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATT 22834 Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621 ||| || ||||| | || || || || ||||| || |||||||||||||| Sbjct 22833 GGTACCAGCGATGTATGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACC 22774 Query 66622 GGCCGTCTTCGAGATGGCAGCACA-ATCGGC-CACTGTCCGGAATATGCCGTCAATGGAG 66679 || |||| ||||| ||||| ||| | | |||| | | || || ||||| Sbjct 22773 AGCATTCTTTGAGATCATGGCACAGATCTTCAAAGTGTC--GTAAATACCATCAATACTA 22716 Query 66680 TCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAG 66739 || |||| ||| | |||| |||| || |||||| | || || || | || ||| Sbjct 22715 TCCTCCTTCATGTCGATGAGGAAGCACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAG 22656 Query 66740 AAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799 ||||| || || | || || |||||||| | | ||||| | || || || ||||| Sbjct 22655 AAGAGTGTTGGGGAGGCATGTGTAAAGTACTTGTTCGACATCAAGTTATATGTTTCGATA 22596 Query 66800 ACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGC 66859 || || || | || || ||||| || | ||| ||||| | | | ||| || Sbjct 22595 GCACTTTCGATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGA 22536 Query 66860 CGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCA 66919 ||||| | | | | | || | | | | ||| || ||||| || || |||| || Sbjct 22535 CGTTCTGCAACCTTGCCATCGAGACGTAGAAGGTATGATCGTTCAAGTGTTTTGAAGCCG 22476 Query 66920 AAGTACGAGTAATTGAAATC 66939 ||||| ||| |||||||| Sbjct 22475 AAGTATTGGTAGTTGAAATC 22456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555382682560