Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq12 360 6e-97 >seq12 Length=476517 Score = 360 bits (398), Expect = 6e-97 Identities = 260/302 (86%), Gaps = 14/302 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 389634 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 389693 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 389694 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 389753 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||| | || ||||||||||||||||| ||| |||| || |||||||||||||||||| Sbjct 389754 GGCCAGTAAATGACCTTAACGCCAGAAATTGGGCGGTAAAACCCAGTTCCGCTTCATTGA 389813 Query 187 TTAAGT-----------aaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 ||||| |||||||||||||||||||||||||||||| || ||| Sbjct 389814 ATAAGTAAAAAAANNNNAAAAAAACGATAAGGGTAGTGGTATTTCAC---CGGCGATTGC 389870 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||||||||||| | | ||| |||||||| ||| |||||||||||||||| Sbjct 389871 TCTCCCACCTATTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCA 389930 Query 296 AC 297 || Sbjct 389931 AC 389932 Score = 257 bits (284), Expect = 5e-66 Identities = 144/145 (99%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 390361 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 390420 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 390421 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 390480 Query 417 ACGAGGCATTTGGCTACCTTAAGAG 441 ||||||||||||||||||||||||| Sbjct 390481 ACGAGGCATTTGGCTACCTTAAGAG 390505 Score = 168 bits (186), Expect = 2e-39 Identities = 99/103 (96%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 390944 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTATTTGAATTACTTCACTTTGACATTC 391003 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 391004 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 391046 Score = 158 bits (174), Expect = 4e-36 Identities = 92/95 (97%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399995 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 400054 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||||||||||||||||||||||||||||||| || Sbjct 400055 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCTCA 400089 Score = 104 bits (114), Expect = 8e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 |||||||||||||||| ||||||| |||||||||||| ||||| |||| ||| ||||| Sbjct 436205 CCGTTTACCCGCGCTTATTTGAATTACTTCACTTTGACCTTCAGGGCACCCGGCTGAAAT 436146 Query 519 CACATTGCGTCAACATCACTTTCTG 543 ||||||||| |||| ||||||||| Sbjct 436145 TACATTGCGTTAACACCACTTTCTG 436121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635198626432