Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21]
475 sequences; 55,416,396 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq396 475 6e-132
seq381 311 1e-82
seq320 194 3e-47
seq90 122 1e-25
seq66 95.1 2e-17
>seq396
Length=970
Score = 475 bits (526), Expect = 6e-132
Identities = 283/295 (96%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 206 TACTAAGCTCAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 264
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 324
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 325 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 384
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 385 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCTT 444
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CACACGTCGAAGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 499
>seq381
Length=138816
Score = 311 bits (344), Expect = 1e-82
Identities = 245/292 (84%), Gaps = 1/292 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||| ||| |||| ||| |||||||||||||||||||||| ||| |
Sbjct 112644 TACTAAGCTTAATTACTATTACAGCGA-GGTTATCAGTAGGGTAAAACTAACCTATCTTA 112586
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
| || ||||||||||||||||| |||||||||||| ||| || |||| || |||||||||
Sbjct 112585 TAACAGTCTAAACCCAGCTCACATTCCCTATTAGTAGGTAAATAATCTAATGCTTACCGA 112526
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||| ||| |||| ||||||||||| | ||| |||||||||||||| | || |||
Sbjct 112525 ATTCTACTTTAGTATAATAGGAAGAGCTAATATCAAAGGATCAAAAAGCGATATCACTAC 112466
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||| ||| || || ||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 112465 AAACACTTAGCCGCTACAAGCCAGTTATCCCTGTAGTAACTTTTCTAGCACCTCTAGCTT 112406
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
|| || || | ||||||||||||| |||||| |||||||||| |||| ||||
Sbjct 112405 CACATATCAAAGGACTAAAGGATCAATAGGCTACACTTTCATAGTTTATATT 112354
>seq320
Length=92412
Score = 194 bits (214), Expect = 3e-47
Identities = 161/195 (83%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||| |||| || | ||| ||| ||||||||||||||||||||| |
Sbjct 41946 TACTAAGCTTAATTACTATTGCGGTAA-GGTTATCTATAGGGTAAAACTAACCTGTCTTA 42004
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|| |||||||||||||| | ||||||| || ||||||||||| ||||||||| ||
Sbjct 42005 CAACAGTCTAAACCCAGCTTATATTCCCTA---GTTGGTGAACAATCTAACGCTTACTGA 42061
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||| ||||||||| |||| |||||| || ||| |||||| ||||||||| ||||||||
Sbjct 42062 ATTCTACTTCGGTATAATAGAAAGAGCTGATATCAAAGGATTAAAAAGCAATGTCGCTAT 42121
Query 181 GAACGCTTGGCTGCC 195
||||||| || |||
Sbjct 42122 AAACGCTTAGCCGCC 42136
>seq90
Length=92242
Score = 122 bits (134), Expect = 1e-25
Identities = 78/84 (93%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 28786 TATTAAGCTCAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 28844
Query 61 TGACGGTCTAAACCCAGCTCACGT 84
|||||||||||||||||||||||
Sbjct 28845 CGACGGTCTAAACCCAGCTCACGT 28868
>seq66
Length=490279
Score = 95.1 bits (104), Expect = 2e-17
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
|||||||||||||| ||||| |||||||||||| ||| | ||||||||||||||||| |
Sbjct 65306 AGTGGGTGAACAATTCAACGTTTACCGAATTCTACTTTGTCATGATAGGAAGAGCCGATA 65365
Query 153 TCGAAGGATCAA 164
||||||| ||||
Sbjct 65366 TCGAAGGGTCAA 65377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854395941600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |