Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq396 475 6e-132 seq381 311 1e-82 seq320 194 3e-47 seq90 122 1e-25 seq66 95.1 2e-17 >seq396 Length=970 Score = 475 bits (526), Expect = 6e-132 Identities = 283/295 (96%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 206 TACTAAGCTCAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 264 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 324 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 325 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 384 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 385 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCTT 444 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 || | |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 CACACGTCGAAGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 499 >seq381 Length=138816 Score = 311 bits (344), Expect = 1e-82 Identities = 245/292 (84%), Gaps = 1/292 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| |||| ||| |||||||||||||||||||||| ||| | Sbjct 112644 TACTAAGCTTAATTACTATTACAGCGA-GGTTATCAGTAGGGTAAAACTAACCTATCTTA 112586 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | || ||||||||||||||||| |||||||||||| ||| || |||| || ||||||||| Sbjct 112585 TAACAGTCTAAACCCAGCTCACATTCCCTATTAGTAGGTAAATAATCTAATGCTTACCGA 112526 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| ||| |||| ||||||||||| | ||| |||||||||||||| | || ||| Sbjct 112525 ATTCTACTTTAGTATAATAGGAAGAGCTAATATCAAAGGATCAAAAAGCGATATCACTAC 112466 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| ||| || || ||||||||||||||||||| ||||||||||| ||||||||||| | Sbjct 112465 AAACACTTAGCCGCTACAAGCCAGTTATCCCTGTAGTAACTTTTCTAGCACCTCTAGCTT 112406 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 || || || | ||||||||||||| |||||| |||||||||| |||| |||| Sbjct 112405 CACATATCAAAGGACTAAAGGATCAATAGGCTACACTTTCATAGTTTATATT 112354 >seq320 Length=92412 Score = 194 bits (214), Expect = 3e-47 Identities = 161/195 (83%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| |||| || | ||| ||| ||||||||||||||||||||| | Sbjct 41946 TACTAAGCTTAATTACTATTGCGGTAA-GGTTATCTATAGGGTAAAACTAACCTGTCTTA 42004 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||||||| | ||||||| || ||||||||||| ||||||||| || Sbjct 42005 CAACAGTCTAAACCCAGCTTATATTCCCTA---GTTGGTGAACAATCTAACGCTTACTGA 42061 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| ||||||||| |||| |||||| || ||| |||||| ||||||||| |||||||| Sbjct 42062 ATTCTACTTCGGTATAATAGAAAGAGCTGATATCAAAGGATTAAAAAGCAATGTCGCTAT 42121 Query 181 GAACGCTTGGCTGCC 195 ||||||| || ||| Sbjct 42122 AAACGCTTAGCCGCC 42136 >seq90 Length=92242 Score = 122 bits (134), Expect = 1e-25 Identities = 78/84 (93%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 || ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 28786 TATTAAGCTCAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 28844 Query 61 TGACGGTCTAAACCCAGCTCACGT 84 ||||||||||||||||||||||| Sbjct 28845 CGACGGTCTAAACCCAGCTCACGT 28868 >seq66 Length=490279 Score = 95.1 bits (104), Expect = 2e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||||||||||||| ||||| |||||||||||| ||| | ||||||||||||||||| | Sbjct 65306 AGTGGGTGAACAATTCAACGTTTACCGAATTCTACTTTGTCATGATAGGAAGAGCCGATA 65365 Query 153 TCGAAGGATCAA 164 ||||||| |||| Sbjct 65366 TCGAAGGGTCAA 65377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854395941600