Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq166 282 8e-74 seq431 280 3e-73 seq247 104 4e-20 seq66 104 4e-20 >seq166 Length=529 Score = 282 bits (312), Expect = 8e-74 Identities = 187/205 (91%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||| ||||| | |||||||| | ||| |||||||||| Sbjct 327 GAACGAGACCTTAACCTGCTAACTAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 386 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 446 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | || ||||||||| Sbjct 447 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 504 Query 200 GAAGGTCTGGGTAATCTTGTTAAAC 224 |||| ||||||||||||||||||| Sbjct 505 AAAGGCCTGGGTAATCTTGTTAAAC 529 >seq431 Length=261634 Score = 280 bits (310), Expect = 3e-73 Identities = 188/207 (91%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 253193 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTA 253252 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 253253 C-TC-CCTTGGCCGAAAGGCCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 253310 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| Sbjct 253311 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGTAAGTCATCAGCTTGCGT 253370 Query 306 TGAT----TACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||| ||||| Sbjct 253371 TGATTAGGTACGTCCCTGCCCCTTGTA 253397 >seq247 Length=574 Score = 104 bits (114), Expect = 4e-20 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| Sbjct 574 GCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCT 515 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 514 GCCCTTTGTA 505 >seq66 Length=490279 Score = 104 bits (114), Expect = 4e-20 Identities = 145/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||| |||||||| ||| |||||| |||||| |||||||||||| ||||| ||| Sbjct 22947 CTGTGTTGCCCTTACATGATCTGGGATGCACGCACGCTACACTGACGAAGCCAGTAAGT- 23005 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || | || |||||| | |||||||||||||| | || ||||| |||| || Sbjct 23006 --ACTCCCTAGCTGGAAGGCCAAGGTAATCTTGTTAAGCCTCGTTGTGCTATAGATAAAG 23063 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 || || |||| ||| || | | | ||||| ||| || | | | || |||| Sbjct 23064 CACTGGAATTCCCCTACTTTAATAAACATTCCCTAGCAAGAGCAATTTACCGGCTTGCGT 23123 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||||| | ||||||||||||||| Sbjct 23124 TGATTTCATCCCTGCCCTTTGTA 23146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947195500800