Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21]
475 sequences; 55,416,396 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq166 282 8e-74
seq431 280 3e-73
seq247 104 4e-20
seq66 104 4e-20
>seq166
Length=529
Score = 282 bits (312), Expect = 8e-74
Identities = 187/205 (91%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||| ||||| | |||||||| | ||| ||||||||||
Sbjct 327 GAACGAGACCTTAACCTGCTAACTAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 386
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 446
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| |||||| ||||| | || |||||||||
Sbjct 447 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 504
Query 200 GAAGGTCTGGGTAATCTTGTTAAAC 224
|||| |||||||||||||||||||
Sbjct 505 AAAGGCCTGGGTAATCTTGTTAAAC 529
>seq431
Length=261634
Score = 280 bits (310), Expect = 3e-73
Identities = 188/207 (91%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 253193 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTA 253252
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || ||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 253253 C-TC-CCTTGGCCGAAAGGCCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 253310
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 253311 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGTAAGTCATCAGCTTGCGT 253370
Query 306 TGAT----TACGTCCCTGCCCTTTGTA 328
|||| ||||||||||||| |||||
Sbjct 253371 TGATTAGGTACGTCCCTGCCCCTTGTA 253397
>seq247
Length=574
Score = 104 bits (114), Expect = 4e-20
Identities = 65/70 (93%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318
||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct 574 GCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCT 515
Query 319 GCCCTTTGTA 328
||||||||||
Sbjct 514 GCCCTTTGTA 505
>seq66
Length=490279
Score = 104 bits (114), Expect = 4e-20
Identities = 145/203 (71%), Gaps = 3/203 (1%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||||| |||||||| ||| |||||| |||||| |||||||||||| ||||| |||
Sbjct 22947 CTGTGTTGCCCTTACATGATCTGGGATGCACGCACGCTACACTGACGAAGCCAGTAAGT- 23005
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || | || |||||| | |||||||||||||| | || ||||| |||| ||
Sbjct 23006 --ACTCCCTAGCTGGAAGGCCAAGGTAATCTTGTTAAGCCTCGTTGTGCTATAGATAAAG 23063
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|| || |||| ||| || | | | ||||| ||| || | | | || ||||
Sbjct 23064 CACTGGAATTCCCCTACTTTAATAAACATTCCCTAGCAAGAGCAATTTACCGGCTTGCGT 23123
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
||||| | |||||||||||||||
Sbjct 23124 TGATTTCATCCCTGCCCTTTGTA 23146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947195500800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |