Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq429 93.3 2e-13 seq222 86.0 2e-11 >seq429 Length=106138 Score = 93.3 bits (102), Expect = 2e-13 Identities = 210/313 (67%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 12734 ACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCA 12793 ||||||||| ||| ||| ||||| || | |||| || ||||| |||| ||| || ||| Sbjct 85539 ACATCGTAATAGATAACGTTCATACCCATTGACTCAGCCAGGACGGAGAGCTGGGAGCCA 85598 Query 12794 ATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGAA 12853 |||| || || || || || || |||||||| || | | ||| | ||| | | | | Sbjct 85599 ATGTGGCCGTAGCCGACAATGCCGAGGGTCTTGCCACGGATTTCCCAGCA-CTTGGCGCT 85657 Query 12854 GTC-TTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAG 12912 | | |||||||| |||| |||| | || ||| | || || | |||||| | || Sbjct 85658 GACCTTGTTCCAGGTGCCGCGGTGCATCTCGTTGGAGCGGTCGCCGAGCTGACGGGCGAG 85717 Query 12913 ATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAATT 12972 || | | || |||| ||||| ||||| || | | |||| ||||| || || Sbjct 85718 GCAGATGATCTCACCGATGACCAGCTCGGCCACACTGCGCGAGTTGGCGAAGGGTGAGTT 85777 Query 12973 AAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGCA 13032 ||||| ||||| || | || || ||| || | ||||| | | || ||||| Sbjct 85778 GAAGACGGCAATACCCTGGCGGGCGGCATAGTCGAGGTCGACCTGGTTGGTGCCGATGCA 85837 Query 13033 GAAGCATCCTATG 13045 ||||||||| ||| Sbjct 85838 GAAGCATCCGATG 85850 >seq222 Length=906787 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| ||||| ||||| | | |||||||||||||||| |||||| | || | Sbjct 889650 CAATTGTCATTCGAGATGGAATAGCGTGAGGGTTGATGATGATATCAGGCGTAACACCTT 889591 Query 364485 CAGCGGTAAAGGGCATATCTTCGGGAGGA-ACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | ||||||||||| || || | || ||| ||| ||| | || ||||| || | Sbjct 889590 CTCGAGTAAAGGGCATGTCCTCTTGTCGATACG-TGACACCCACAGTACCCTTCTGACCG 889532 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||| ||||||||||| ||||| Sbjct 889531 TGACGAGAGGCAAACTTGTCACCAAT 889506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884874928699175