Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq11 163 3e-38 >seq11 Length=2503103 Score = 163 bits (180), Expect = 3e-38 Identities = 153/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 2468368 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 2468427 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||| | || |||||||||||| |||| |||||||||||| |||| | ||| Sbjct 2468428 AGCAAAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGGCA 2468487 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| ||| ||| || | ||| | || |||| | ||| Sbjct 2468488 CACCCAGTGAAGGGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 2468547 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 2468548 GTGAGGCGGACC 2468559 Score = 163 bits (180), Expect = 3e-38 Identities = 153/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 2476469 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 2476528 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||| | || |||||||||||| |||| |||||||||||| |||| | ||| Sbjct 2476529 AGCAAAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGGCA 2476588 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| ||| ||| || | ||| | || |||| | ||| Sbjct 2476589 CACCCAGTGAAGGGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 2476648 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 2476649 GTGAGGCGGACC 2476660 Score = 163 bits (180), Expect = 3e-38 Identities = 153/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 2492693 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 2492752 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||| | || |||||||||||| |||| |||||||||||| |||| | ||| Sbjct 2492753 AGCAAAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGGCA 2492812 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| ||| ||| || | ||| | || |||| | ||| Sbjct 2492813 CACCCAGTGAAGGGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 2492872 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 2492873 GTGAGGCGGACC 2492884 Score = 163 bits (180), Expect = 3e-38 Identities = 153/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 2500804 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 2500863 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||| | || |||||||||||| |||| |||||||||||| |||| | ||| Sbjct 2500864 AGCAAAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGGCA 2500923 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| ||| ||| || | ||| | || |||| | ||| Sbjct 2500924 CACCCAGTGAAGGGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 2500983 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 2500984 GTGAGGCGGACC 2500995 Score = 159 bits (176), Expect = 4e-37 Identities = 153/192 (80%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 2484583 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 2484642 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||| | || |||||||||||| |||| |||||||||||| |||| | ||| Sbjct 2484643 AGCAAAGGCCTGCCTGGAGCACTCTAATTTT-TCAAAGTAAAAGTCCTGTTTCCCCGGCA 2484701 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| ||| ||| || | ||| | || |||| | ||| Sbjct 2484702 CACCCAGTGAAGGGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 2484761 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 2484762 GTGAGGCGGACC 2484773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595199803956