Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq11 219 7e-55 >seq11 Length=2503103 Score = 219 bits (242), Expect = 7e-55 Identities = 222/282 (79%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 2472040 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 2471983 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2471982 GCCGCGATGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 2471923 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| ||||||||||| |||| | Sbjct 2471922 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTCCGGCTTAGCGT 2471865 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 |||||||||| | | || | || |||||| | | | | | | ||| || Sbjct 2471864 CTTAGCAGGCGATTCCTCCACTGCTCTC-----GAAGCGAGTAGTGGT-ATTTCGCGAAT 2471811 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| || | || ||| ||||||||||||||||||| Sbjct 2471810 TGTAATTTCAGCACGAGCGGGGTTAAATCCTTTGCAGACGAC 2471769 Score = 219 bits (242), Expect = 7e-55 Identities = 222/282 (79%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 2480154 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 2480097 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2480096 GCCGCGATGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 2480037 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| ||||||||||| |||| | Sbjct 2480036 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTCCGGCTTAGCGT 2479979 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 |||||||||| | | || | || |||||| | | | | | | ||| || Sbjct 2479978 CTTAGCAGGCGATTCCTCCACTGCTCTC-----GAAGCGAGTAGTGGT-ATTTCGCGAAT 2479925 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| || | || ||| ||||||||||||||||||| Sbjct 2479924 TGTAATTTCAGCACGAGCGGGGTTAAATCCTTTGCAGACGAC 2479883 Score = 219 bits (242), Expect = 7e-55 Identities = 222/282 (79%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 2488265 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 2488208 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2488207 GCCGCGATGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 2488148 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| ||||||||||| |||| | Sbjct 2488147 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTCCGGCTTAGCGT 2488090 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 |||||||||| | | || | || |||||| | | | | | | ||| || Sbjct 2488089 CTTAGCAGGCGATTCCTCCACTGCTCTC-----GAAGCGAGTAGTGGT-ATTTCGCGAAT 2488036 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| || | || ||| ||||||||||||||||||| Sbjct 2488035 TGTAATTTCAGCACGAGCGGGGTTAAATCCTTTGCAGACGAC 2487994 Score = 219 bits (242), Expect = 7e-55 Identities = 222/282 (79%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 2496376 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 2496319 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2496318 GCCGCGATGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 2496259 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| ||||||||||| |||| | Sbjct 2496258 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTCCGGCTTAGCGT 2496201 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 |||||||||| | | || | || |||||| | | | | | | ||| || Sbjct 2496200 CTTAGCAGGCGATTCCTCCACTGCTCTC-----GAAGCGAGTAGTGGT-ATTTCGCGAAT 2496147 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| || | || ||| ||||||||||||||||||| Sbjct 2496146 TGTAATTTCAGCACGAGCGGGGTTAAATCCTTTGCAGACGAC 2496105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199730176