Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq6 342 4e-89
seq9 141 7e-29
>seq6
Length=6290098
Score = 342 bits (378), Expect = 4e-89
Identities = 1229/1893 (65%), Gaps = 78/1893 (4%)
Strand=Plus/Plus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||| |||||||| || | || ||| |||| || | || ||||||||||| |||
Sbjct 2838154 TCGACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTC 2838213
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196
||||| ||| ||| | ||| ||||| || | || |||| | | |||| ||
Sbjct 2838214 TTGAGACCAAGCTTCCAGCCGGCGAAGTGCATAC-TGGTGATCTTGCCCATTGTCGGGTC 2838272
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
|| || || || | ||||| ||| |||||| | |||||| || ||||||||
Sbjct 2838273 CTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCGGCAGCCAT 2838332
Query 65257 GT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCT 65312
| ||| | | || | || |||||||| |||||||||||||| | | | ||||
Sbjct 2838333 CTGAACAACGGTGCGCTGG---GAGATCTCCCAAACGGTCTTGTACAGA-GCCTTGACCT 2838388
Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372
|| ||||| | |||| ||||| ||||| || || || || || ||
Sbjct 2838389 CAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGGTTCTTCA 2838448
Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432
| | || ||||||| |||| |||| |||| | | ||| | |||| || |
Sbjct 2838449 TGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGGTTGACAACCT 2838508
Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492
|||||||||||| || |||||||| ||||||||||| ||| ||| || ||| | |
Sbjct 2838509 GGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACT 2838568
Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552
| ||||||| | || || | ||| || ||||| ||||||||||| || | ||| ||
Sbjct 2838569 CGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAAACTGT 2838628
Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612
| |||| |||| | | || | | || | |||||| | ||| | |||
Sbjct 2838629 TGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGTGAGTCCCAATCCCAGA--GGTCAGA 2838686
Query 65613 CGTC--GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGT----G 65666
| | ||||| | ||||| || | || ||| | || |||| | | |
Sbjct 2838687 GGGCTTGACATTC------CACATGTCGTACTGGAGGATACC----CTGGGAGATAGGGG 2838736
Query 65667 AACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA-CAGC--TGGTCTCGA 65723
| || | | | ||| |||||||||||||| || ||| ||| |||| |
Sbjct 2838737 AGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATGGTA---A 2838793
Query 65724 GTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTC 65782
| || || || ||||||||||| || | || || || ||||| |||||| |
Sbjct 2838794 GAGCAGCGTGGTAGATGGTCTCGAAGAT-CTTCTTGTTGAGATCACGGGCCTCAGGAGAC 2838852
Query 65783 TCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATG 65842
||| | ||||| | | || |||| || || ||||| || || |||| ||| |||
Sbjct 2838853 TCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAATG 2838912
Query 65843 GGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATA 65902
|| || ||||||| ||| | ||||| || || ||||||| |||| ||| ||
Sbjct 2838913 GGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATG 2838972
Query 65903 ATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAAATCAA 65960
|| ||||| ||||| || || || | || ||| | ||| ||| ||
Sbjct 2838973 ATCTTGTTCAAGTTGCGAACAACGACCTGA--GTAACCTCGTGAAGCTTCTGGAAGTC-- 2839028
Query 65961 AATGTTTAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018
|| | || |||| | ||| | || || |||| || ||||| || ||
Sbjct 2839029 ---GTAGAC-ACCATCGTTGTAGT--------CAACGAAGGTGGGCAGAGCAAGGGAAGC 2839076
Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078
| |||||||||||| | ||| || || ||| ||||| | || || ||||| || ||
Sbjct 2839077 CAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCAAAGGTT 2839136
Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138
|| ||| || || || | |||| || || |||||||| ||| |||||||||||
Sbjct 2839137 GGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTA 2839196
Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198
| |||| | || |||| ||||| || | ||| | |||||| | |||||| |
Sbjct 2839197 AAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTG 2839256
Query 66199 TGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGA 66257
||||| | || | | | |||| || | ||| ||||| | ||||| | | ||||
Sbjct 2839257 GGCCTTGATGGT-CTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGA 2839315
Query 66258 AGGATTCACCCCATACT--TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA 66315
| | | | ||||| || | ||| | || |||| | || ||||| || | |||
Sbjct 2839316 AC--TCCTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCA 2839373
Query 66316 ATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAG 66375
|| | | || || || | ||| || ||||| || |||||||| ||| ||| ||
Sbjct 2839374 GTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAG 2839433
Query 66376 ATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGAT 66435
|| || || || |||||| |||| || || ||||||||||| | |||||| ||||
Sbjct 2839434 GTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAGAC 2839493
Query 66436 GTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495
|||||| ||||| || || ||||| || ||||| | ||| ||| ||| |||||| ||
Sbjct 2839494 GTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTG 2839553
Query 66496 GTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTT 66555
||||||||||||||| ||||| |||||||| | ||| || | || ||||| || |
Sbjct 2839554 GTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGT 2839613
Query 66556 GCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAAT 66615
||| ||||||||| | || ||| || || || ||| |||| | || ||||||||
Sbjct 2839614 GCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGAGACCAAT 2839673
Query 66616 ACCACCGGCCGTCTTCGAGATGGCAGCACAA-TCG-GCCACTGTCCGGAATATGCCGTCA 66673
||||| ||| |||| ||||| || || || | |||| | | || || |||
Sbjct 2839674 GCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC--GTAGATACCCTCA 2839731
Query 66674 ATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCG 66733
|| ||||| |||| ||| | |||| |||||||| || ||| | || || |
Sbjct 2839732 ATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCA 2839791
Query 66734 GCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTC 66793
|| |||||| ||||| | || || || ||| | | || |||||| ||||| |||
Sbjct 2839792 GCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTC 2839851
Query 66794 TCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTAT 66853
|||||||| || | ||| || || || |||| |||| ||||| | | ||
Sbjct 2839852 TCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATGTGC 2839911
Query 66854 TGAGGCCGTTCGACCAGC---CGATC---CTTGATATGCATTAAGTAGGAGCGTTCCAGG 66907
|| || | ||| | | | | ||| ||||| || | ||| || | ||||||
Sbjct 2839912 TGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGA---GC---AGGTATGATCTCTCCAGG 2839965
Query 66908 GTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940
||||||| || ||||| ||| ||||| |||
Sbjct 2839966 GTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCG 2839998
>seq9
Length=4851470
Score = 141 bits (156), Expect = 7e-29
Identities = 210/296 (71%), Gaps = 5/296 (2%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || |||||||||||||| | |||||| | ||| |
Sbjct 3450076 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 3450135
Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202
||||| || | | |||||| | | | | ||| | ||| | | |||||
Sbjct 3450136 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGAT-GATGAGAAGTACTTCATCTC 3450194
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||| ||||| ||||||||||||||||||||||| | | || ||
Sbjct 3450195 TCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAATGAGAACCTGGTCGAGCG 3450254
Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322
||| | ||||| || || | ||||| || || ||||||||||||||||| ||
Sbjct 3450255 CTTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 3450314
Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378
|||||| ||||||| |||| ||| | |||||||| || ||||||| |||||
Sbjct 3450315 GGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGC 3450370
Score = 134 bits (148), Expect = 1e-26
Identities = 337/503 (67%), Gaps = 13/503 (3%)
Strand=Plus/Plus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGAT 61492
||| || || |||||| | || ||||||| | | | ||| || | || | | ||
Sbjct 3450479 GAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCC-TTCGCCCAGCGTC 3450537
Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552
|| | || ||||| | || |||||| | || ||||| || | |||||| | |||||||
Sbjct 3450538 TGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTT 3450597
Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612
|| | ||||| ||||| || |||||||||||||||||| ||| ||| | || || || |
Sbjct 3450598 GGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTG 3450657
Query 61613 ACGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATC 61669
||||||| |||| || |||| ||| | ||| || || || || | | |
Sbjct 3450658 ACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTG-TACTCTCAC-----CTCAAGCACC 3450711
Query 61670 GTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAAT 61729
| || || || | | || || | ||| || || | || || ||||| |
Sbjct 3450712 GCCCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGT 3450771
Query 61730 TTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789
| || ||||| ||| ||||| | | || |||||||||| | | ||| |||||
Sbjct 3450772 TCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGT 3450831
Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAAT 61848
| ||||| || ||||||||||| || |||||| | |||| | || || |||| ||
Sbjct 3450832 ACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGG-TCTACAAG 3450890
Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908
| ||||| || || |||||||| | || || || | |||||||| || || ||
Sbjct 3450891 TCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTT 3450950
Query 61909 GAGAAACGTGTAGGCGACTATCA 61931
||||| ||||| | ||||| ||
Sbjct 3450951 GAGAAGCGTGTCGCTGACTACCA 3450973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567835257760
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