Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 342 4e-89 seq9 141 7e-29 >seq6 Length=6290098 Score = 342 bits (378), Expect = 4e-89 Identities = 1229/1893 (65%), Gaps = 78/1893 (4%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | || ||| |||| || | || ||||||||||| ||| Sbjct 2838154 TCGACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTC 2838213 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 ||||| ||| ||| | ||| ||||| || | || |||| | | |||| || Sbjct 2838214 TTGAGACCAAGCTTCCAGCCGGCGAAGTGCATAC-TGGTGATCTTGCCCATTGTCGGGTC 2838272 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || | ||||| ||| |||||| | |||||| || |||||||| Sbjct 2838273 CTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCGGCAGCCAT 2838332 Query 65257 GT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCT 65312 | ||| | | || | || |||||||| |||||||||||||| | | | |||| Sbjct 2838333 CTGAACAACGGTGCGCTGG---GAGATCTCCCAAACGGTCTTGTACAGA-GCCTTGACCT 2838388 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 || ||||| | |||| ||||| ||||| || || || || || || Sbjct 2838389 CAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGGTTCTTCA 2838448 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | | || ||||||| |||| |||| |||| | | ||| | |||| || | Sbjct 2838449 TGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGGTTGACAACCT 2838508 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||||| || |||||||| ||||||||||| ||| ||| || ||| | | Sbjct 2838509 GGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACT 2838568 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | ||||||| | || || | ||| || ||||| ||||||||||| || | ||| || Sbjct 2838569 CGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAAACTGT 2838628 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612 | |||| |||| | | || | | || | |||||| | ||| | ||| Sbjct 2838629 TGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGTGAGTCCCAATCCCAGA--GGTCAGA 2838686 Query 65613 CGTC--GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGT----G 65666 | | ||||| | ||||| || | || ||| | || |||| | | | Sbjct 2838687 GGGCTTGACATTC------CACATGTCGTACTGGAGGATACC----CTGGGAGATAGGGG 2838736 Query 65667 AACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA-CAGC--TGGTCTCGA 65723 | || | | | ||| |||||||||||||| || ||| ||| |||| | Sbjct 2838737 AGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATGGTA---A 2838793 Query 65724 GTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTC 65782 | || || || ||||||||||| || | || || || ||||| |||||| | Sbjct 2838794 GAGCAGCGTGGTAGATGGTCTCGAAGAT-CTTCTTGTTGAGATCACGGGCCTCAGGAGAC 2838852 Query 65783 TCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATG 65842 ||| | ||||| | | || |||| || || ||||| || || |||| ||| ||| Sbjct 2838853 TCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAATG 2838912 Query 65843 GGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATA 65902 || || ||||||| ||| | ||||| || || ||||||| |||| ||| || Sbjct 2838913 GGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATG 2838972 Query 65903 ATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAAATCAA 65960 || ||||| ||||| || || || | || ||| | ||| ||| || Sbjct 2838973 ATCTTGTTCAAGTTGCGAACAACGACCTGA--GTAACCTCGTGAAGCTTCTGGAAGTC-- 2839028 Query 65961 AATGTTTAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018 || | || |||| | ||| | || || |||| || ||||| || || Sbjct 2839029 ---GTAGAC-ACCATCGTTGTAGT--------CAACGAAGGTGGGCAGAGCAAGGGAAGC 2839076 Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078 | |||||||||||| | ||| || || ||| ||||| | || || ||||| || || Sbjct 2839077 CAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCAAAGGTT 2839136 Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138 || ||| || || || | |||| || || |||||||| ||| ||||||||||| Sbjct 2839137 GGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTA 2839196 Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198 | |||| | || |||| ||||| || | ||| | |||||| | |||||| | Sbjct 2839197 AAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTG 2839256 Query 66199 TGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGA 66257 ||||| | || | | | |||| || | ||| ||||| | ||||| | | |||| Sbjct 2839257 GGCCTTGATGGT-CTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGA 2839315 Query 66258 AGGATTCACCCCATACT--TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA 66315 | | | | ||||| || | ||| | || |||| | || ||||| || | ||| Sbjct 2839316 AC--TCCTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCA 2839373 Query 66316 ATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAG 66375 || | | || || || | ||| || ||||| || |||||||| ||| ||| || Sbjct 2839374 GTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAG 2839433 Query 66376 ATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGAT 66435 || || || || |||||| |||| || || ||||||||||| | |||||| |||| Sbjct 2839434 GTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAGAC 2839493 Query 66436 GTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 |||||| ||||| || || ||||| || ||||| | ||| ||| ||| |||||| || Sbjct 2839494 GTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTG 2839553 Query 66496 GTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTT 66555 ||||||||||||||| ||||| |||||||| | ||| || | || ||||| || | Sbjct 2839554 GTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGT 2839613 Query 66556 GCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAAT 66615 ||| ||||||||| | || ||| || || || ||| |||| | || |||||||| Sbjct 2839614 GCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGTTGAGACCAAT 2839673 Query 66616 ACCACCGGCCGTCTTCGAGATGGCAGCACAA-TCG-GCCACTGTCCGGAATATGCCGTCA 66673 ||||| ||| |||| ||||| || || || | |||| | | || || ||| Sbjct 2839674 GCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC--GTAGATACCCTCA 2839731 Query 66674 ATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCG 66733 || ||||| |||| ||| | |||| |||||||| || ||| | || || | Sbjct 2839732 ATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCA 2839791 Query 66734 GCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTC 66793 || |||||| ||||| | || || || ||| | | || |||||| ||||| ||| Sbjct 2839792 GCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTC 2839851 Query 66794 TCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTAT 66853 |||||||| || | ||| || || || |||| |||| ||||| | | || Sbjct 2839852 TCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATGTGC 2839911 Query 66854 TGAGGCCGTTCGACCAGC---CGATC---CTTGATATGCATTAAGTAGGAGCGTTCCAGG 66907 || || | ||| | | | | ||| ||||| || | ||| || | |||||| Sbjct 2839912 TGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGA---GC---AGGTATGATCTCTCCAGG 2839965 Query 66908 GTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 ||||||| || ||||| ||| ||||| ||| Sbjct 2839966 GTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCG 2839998 >seq9 Length=4851470 Score = 141 bits (156), Expect = 7e-29 Identities = 210/296 (71%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | |||||| | ||| | Sbjct 3450076 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 3450135 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | | | | ||| | ||| | | ||||| Sbjct 3450136 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGAT-GATGAGAAGTACTTCATCTC 3450194 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| ||||| ||||||||||||||||||||||| | | || || Sbjct 3450195 TCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAATGAGAACCTGGTCGAGCG 3450254 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | ||||| || || | ||||| || || ||||||||||||||||| || Sbjct 3450255 CTTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 3450314 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 |||||| ||||||| |||| ||| | |||||||| || ||||||| ||||| Sbjct 3450315 GGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGC 3450370 Score = 134 bits (148), Expect = 1e-26 Identities = 337/503 (67%), Gaps = 13/503 (3%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGAT 61492 ||| || || |||||| | || ||||||| | | | ||| || | || | | || Sbjct 3450479 GAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCC-TTCGCCCAGCGTC 3450537 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || | || ||||| | || |||||| | || ||||| || | |||||| | ||||||| Sbjct 3450538 TGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTT 3450597 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || |||||||||||||||||| ||| ||| | || || || | Sbjct 3450598 GGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTG 3450657 Query 61613 ACGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATC 61669 ||||||| |||| || |||| ||| | ||| || || || || | | | Sbjct 3450658 ACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTG-TACTCTCAC-----CTCAAGCACC 3450711 Query 61670 GTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAAT 61729 | || || || | | || || | ||| || || | || || ||||| | Sbjct 3450712 GCCCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGT 3450771 Query 61730 TTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | || ||||| ||| ||||| | | || |||||||||| | | ||| ||||| Sbjct 3450772 TCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGT 3450831 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAAT 61848 | ||||| || ||||||||||| || |||||| | |||| | || || |||| || Sbjct 3450832 ACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGG-TCTACAAG 3450890 Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908 | ||||| || || |||||||| | || || || | |||||||| || || || Sbjct 3450891 TCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTT 3450950 Query 61909 GAGAAACGTGTAGGCGACTATCA 61931 ||||| ||||| | ||||| || Sbjct 3450951 GAGAAGCGTGTCGCTGACTACCA 3450973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567835257760