Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2283 178 2e-42 >seq2283 Length=476 Score = 178 bits (196), Expect = 2e-42 Identities = 116/125 (93%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| | || |||||| Sbjct 128 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGGCCGGGCAGT 71 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 70 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 11 Query 121 GAACG 125 ||||| Sbjct 10 GAACG 6 Score = 161 bits (178), Expect = 2e-37 Identities = 105/113 (93%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 |||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||||| Sbjct 476 ACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGTGC 419 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 418 CGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCA 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819179255296