Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq719 372 2e-98 seq1802 134 1e-26 >seq719 Length=48969 Score = 372 bits (412), Expect = 2e-98 Identities = 1173/1794 (65%), Gaps = 74/1794 (4%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | || ||| |||| || | || ||||||||||| ||| Sbjct 15741 TCGACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTC 15800 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 ||||| ||| ||| | ||| ||||| | || | || |||| | | |||| || Sbjct 15801 TTGAGACCAAGCTTCCAGCCGGCGAAGTGCAT-GCTGGTGATCTTGCCCATTGTCGGGTC 15859 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || | ||||| ||| |||||| | |||||| || |||||||| Sbjct 15860 CTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCGGCAGCCAT 15919 Query 65257 GT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCT 65312 | ||| | || | || |||||||| || |||||||||| | | | |||| Sbjct 15920 CTGGACAACCGTGCGCTGG---GAGATCTCCCATACAGTCTTGTACAAA-GCCTTGACCT 15975 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 || ||||| | |||| ||| | ||||| || || || || || || Sbjct 15976 CAGCGGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCGATGATACGGTTCTTCA 16035 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | | || ||||||| |||| |||| |||| | | ||| | |||| || | Sbjct 16036 TGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAGCAACCAGGGGTTGACAACCT 16095 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||||| || |||||||| ||||||||||| ||| ||| || ||| | | Sbjct 16096 GGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACT 16155 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | ||||||| | || || | ||| || ||||| |||||||| || || | ||| || Sbjct 16156 CGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACGAGCAAACTGT 16215 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCG----TCCCAGTTCCACATCGGT 65608 | |||| |||| | || || | || | | | | ||||||| ||| | | Sbjct 16216 TGCGCACACCGTGC---TCCTTGATCTG-CTCCTTCAGAGAATCCCAGTCCCAAA---GA 16268 Query 65609 TTATCG---TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGT 65665 | | | | ||||| | ||||| || | || ||| | || |||| | | Sbjct 16269 TCAGAGGGCTTGACATTC------CACATGTCGTACTGAAGGATACC----CTGGGAGAT 16318 Query 65666 ----GAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGC---TGGT 65718 || || | | | ||| |||||||||||||| || ||| | |||| Sbjct 16319 AGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACATGGT 16378 Query 65719 CTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCAT 65777 | || || || || |||||||| || || | || || || ||||| |||||| Sbjct 16379 C---AGAGCAGCGTGGTAGATGGTCTCAAAGAT-CTTCTTGTTGAGATCACGGGCCTCAG 16434 Query 65778 CGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATAC 65837 |||| | ||||| | | || |||| || || ||||| || || |||| || Sbjct 16435 GAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGAC 16494 Query 65838 CGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATAT 65897 | ||||| || ||||||| ||| | | ||||| || || ||||||| |||| || Sbjct 16495 CAATGGGGCGGTGACGCATGTTGCTATTGCGAGCCTCGGGAACGGGGTAGTGGTTGACAT 16554 Query 65898 CGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAA 65955 | || || ||||| ||||| || || || || | ||| | ||| ||| Sbjct 16555 CAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGA--CCTCGTGAAGCTTCTGGAA 16612 Query 65956 ATCAAAATGTTTAGG-ACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAG 66012 ||| ||| || |||| | ||| | || || |||| |||||||| Sbjct 16613 GTCA-------TAGACACCATCGTTGTAGT--------CAACGAAGGTGGGCAGGGCAAG 16657 Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072 || || | |||||||||||| | ||| || |||||| ||||| | || || ||||| Sbjct 16658 GGAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCA 16717 Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATC 66132 || || || ||| ||||| |||| |||| || || |||||||| ||| ||||| Sbjct 16718 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 16777 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 |||||| | |||| | || |||| ||||| || | ||||| |||||| | |||||| Sbjct 16778 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAG 16837 Query 66193 AGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGT 66251 | ||||| | || | | | |||| || | ||||||||| | ||||| | | Sbjct 16838 CTTCTGGGCCTTGATAGT-CTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGG 16896 Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311 ||||| ||| || | || | || | || |||| | || ||||| || | Sbjct 16897 CCTCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGG 16956 Query 66312 ACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371 ||| || | | || || || | ||| || ||||| || |||||||| ||| || Sbjct 16957 TCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGA 17016 Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAA 66431 | |||||||| || || |||||| ||||||| || ||||||||||| | |||||| | Sbjct 17017 AAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGA 17076 Query 66432 AGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCAC 66491 ||| ||||| ||||| || || ||||| |||||||| | || ||| ||| ||||| Sbjct 17077 AGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCAC 17136 Query 66492 CTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAG 66551 | ||||||||||||||||| |||||||||||||| | ||| || | || ||||| | Sbjct 17137 CCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTCG 17196 Query 66552 ATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGAC 66611 || | || ||||||||| | ||| ||| || || || ||| |||| | || |||| Sbjct 17197 ATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGAC 17256 Query 66612 CAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TCG-GCCACTGTCCGGAATATGCC 66669 |||| ||||| ||| |||| ||||| || || || | |||| |||| || Sbjct 17257 CAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATA--CC 17314 Query 66670 GTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGT 66729 ||||| ||||| |||| ||| | |||| |||||||| || ||| | || || Sbjct 17315 CTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGT 17374 Query 66730 GGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTA 66789 | || |||||| ||||| | ||||| || ||| | | || |||||| ||||| Sbjct 17375 ACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTA 17434 Query 66790 CGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCAT 66843 |||||||||||| || | ||| || || || |||| |||| ||||| Sbjct 17435 GGTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCAT 17488 >seq1802 Length=45256 Score = 134 bits (148), Expect = 1e-26 Identities = 207/294 (70%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | |||||| | ||| | Sbjct 29946 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 29887 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | | | | ||| | ||| | | ||||| Sbjct 29886 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGAT-GATGAGAAGTACTTCATCTC 29828 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| ||||| ||||| ||||||||||| ||||| | | || || Sbjct 29827 TCACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 29768 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | ||||| || || | ||||| || || ||||||||||||||||| || Sbjct 29767 CTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 29708 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 |||||| ||||||| |||| ||| | ||||||||||| ||||||| ||| Sbjct 29707 GGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGA 29654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555334228960