Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq719 372 2e-98
seq1802 134 1e-26
>seq719
Length=48969
Score = 372 bits (412), Expect = 2e-98
Identities = 1173/1794 (65%), Gaps = 74/1794 (4%)
Strand=Plus/Plus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||| |||||||| || | || ||| |||| || | || ||||||||||| |||
Sbjct 15741 TCGACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTC 15800
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196
||||| ||| ||| | ||| ||||| | || | || |||| | | |||| ||
Sbjct 15801 TTGAGACCAAGCTTCCAGCCGGCGAAGTGCAT-GCTGGTGATCTTGCCCATTGTCGGGTC 15859
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
|| || || || | ||||| ||| |||||| | |||||| || ||||||||
Sbjct 15860 CTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCGGCAGCCAT 15919
Query 65257 GT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCT 65312
| ||| | || | || |||||||| || |||||||||| | | | ||||
Sbjct 15920 CTGGACAACCGTGCGCTGG---GAGATCTCCCATACAGTCTTGTACAAA-GCCTTGACCT 15975
Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372
|| ||||| | |||| ||| | ||||| || || || || || ||
Sbjct 15976 CAGCGGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCGATGATACGGTTCTTCA 16035
Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432
| | || ||||||| |||| |||| |||| | | ||| | |||| || |
Sbjct 16036 TGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAGCAACCAGGGGTTGACAACCT 16095
Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492
|||||||||||| || |||||||| ||||||||||| ||| ||| || ||| | |
Sbjct 16096 GGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACT 16155
Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552
| ||||||| | || || | ||| || ||||| |||||||| || || | ||| ||
Sbjct 16156 CGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACGAGCAAACTGT 16215
Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCG----TCCCAGTTCCACATCGGT 65608
| |||| |||| | || || | || | | | | ||||||| ||| | |
Sbjct 16216 TGCGCACACCGTGC---TCCTTGATCTG-CTCCTTCAGAGAATCCCAGTCCCAAA---GA 16268
Query 65609 TTATCG---TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGT 65665
| | | | ||||| | ||||| || | || ||| | || |||| | |
Sbjct 16269 TCAGAGGGCTTGACATTC------CACATGTCGTACTGAAGGATACC----CTGGGAGAT 16318
Query 65666 ----GAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGC---TGGT 65718
|| || | | | ||| |||||||||||||| || ||| | ||||
Sbjct 16319 AGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACATGGT 16378
Query 65719 CTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCAT 65777
| || || || || |||||||| || || | || || || ||||| ||||||
Sbjct 16379 C---AGAGCAGCGTGGTAGATGGTCTCAAAGAT-CTTCTTGTTGAGATCACGGGCCTCAG 16434
Query 65778 CGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATAC 65837
|||| | ||||| | | || |||| || || ||||| || || |||| ||
Sbjct 16435 GAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGAC 16494
Query 65838 CGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATAT 65897
| ||||| || ||||||| ||| | | ||||| || || ||||||| |||| ||
Sbjct 16495 CAATGGGGCGGTGACGCATGTTGCTATTGCGAGCCTCGGGAACGGGGTAGTGGTTGACAT 16554
Query 65898 CGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAA 65955
| || || ||||| ||||| || || || || | ||| | ||| |||
Sbjct 16555 CAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGA--CCTCGTGAAGCTTCTGGAA 16612
Query 65956 ATCAAAATGTTTAGG-ACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAG 66012
||| ||| || |||| | ||| | || || |||| ||||||||
Sbjct 16613 GTCA-------TAGACACCATCGTTGTAGT--------CAACGAAGGTGGGCAGGGCAAG 16657
Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072
|| || | |||||||||||| | ||| || |||||| ||||| | || || |||||
Sbjct 16658 GGAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCA 16717
Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATC 66132
|| || || ||| ||||| |||| |||| || || |||||||| ||| |||||
Sbjct 16718 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 16777
Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192
|||||| | |||| | || |||| ||||| || | ||||| |||||| | ||||||
Sbjct 16778 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAG 16837
Query 66193 AGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGT 66251
| ||||| | || | | | |||| || | ||||||||| | ||||| | |
Sbjct 16838 CTTCTGGGCCTTGATAGT-CTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGG 16896
Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311
||||| ||| || | || | || | || |||| | || ||||| || |
Sbjct 16897 CCTCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGG 16956
Query 66312 ACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371
||| || | | || || || | ||| || ||||| || |||||||| ||| ||
Sbjct 16957 TCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGA 17016
Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAA 66431
| |||||||| || || |||||| ||||||| || ||||||||||| | |||||| |
Sbjct 17017 AAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGA 17076
Query 66432 AGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCAC 66491
||| ||||| ||||| || || ||||| |||||||| | || ||| ||| |||||
Sbjct 17077 AGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCAC 17136
Query 66492 CTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAG 66551
| ||||||||||||||||| |||||||||||||| | ||| || | || ||||| |
Sbjct 17137 CCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTCG 17196
Query 66552 ATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGAC 66611
|| | || ||||||||| | ||| ||| || || || ||| |||| | || ||||
Sbjct 17197 ATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGAC 17256
Query 66612 CAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TCG-GCCACTGTCCGGAATATGCC 66669
|||| ||||| ||| |||| ||||| || || || | |||| |||| ||
Sbjct 17257 CAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATA--CC 17314
Query 66670 GTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGT 66729
||||| ||||| |||| ||| | |||| |||||||| || ||| | || ||
Sbjct 17315 CTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGT 17374
Query 66730 GGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTA 66789
| || |||||| ||||| | ||||| || ||| | | || |||||| |||||
Sbjct 17375 ACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTA 17434
Query 66790 CGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCAT 66843
|||||||||||| || | ||| || || || |||| |||| |||||
Sbjct 17435 GGTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCAT 17488
>seq1802
Length=45256
Score = 134 bits (148), Expect = 1e-26
Identities = 207/294 (70%), Gaps = 5/294 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || |||||||||||||| | |||||| | ||| |
Sbjct 29946 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 29887
Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202
||||| || | | |||||| | | | | ||| | ||| | | |||||
Sbjct 29886 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGAT-GATGAGAAGTACTTCATCTC 29828
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||| ||||| ||||| ||||||||||| ||||| | | || ||
Sbjct 29827 TCACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 29768
Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322
||| | ||||| || || | ||||| || || ||||||||||||||||| ||
Sbjct 29767 CTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 29708
Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|||||| ||||||| |||| ||| | ||||||||||| ||||||| |||
Sbjct 29707 GGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGA 29654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397555334228960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |