Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq52 349 6e-94
seq520 188 1e-45
seq336 149 1e-33
seq542 100 5e-19
seq235 84.2 4e-14
>seq52
Length=224
Score = 349 bits (386), Expect = 6e-94
Identities = 210/221 (95%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||||
Sbjct 221 CAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTA 162
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 161 GCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 102
Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 101 TGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 42
Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATG 287
||||||||||||||||||||||||||| || |||||||||
Sbjct 41 TTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATG 1
>seq520
Length=96894
Score = 188 bits (208), Expect = 1e-45
Identities = 193/251 (77%), Gaps = 1/251 (0%)
Strand=Plus/Plus
Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG 127
|||||||||||||| ||||||||| ||| | ||| |||||| | || |||| |||||
Sbjct 91213 AGGACTTTTACTTTAAAAAAATTAAAGTACTTTAAGTAGGCCTATACTTAAATATATTAG 91272
Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187
|| |||||||| |||| |||| |||||||||| || |||| || ||| | ||||
Sbjct 91273 TATAGAATAATAAAATAAAACGTATAGTTCTATTTTATTAGTTTTTAAGACTACTATAAT 91332
Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247
||||||||||||||| ||||| | |||||| |||| | |||||| |||||||| ||||
Sbjct 91333 AATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATT 91392
Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307
|||| |||||||| || | ||||| || || || || |||| ||| || | |||
Sbjct 91393 TATTAAAGACTAAATATTATAAAAGCATTTACTAAAAATATTTTTATTTATTA-AGAATA 91451
Query 308 AAAGTTAGGGG 318
||||||| |||
Sbjct 91452 AAAGTTAAGGG 91462
>seq336
Length=139612
Score = 149 bits (164), Expect = 1e-33
Identities = 95/101 (94%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 39142 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTG 39201
Query 279 CCAAGGATG-TTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 39202 CCAAGGATGNTTTTCATTTATCAG-GAACGAAAGTTAGGGG 39241
>seq542
Length=508980
Score = 100 bits (110), Expect = 5e-19
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 166 TGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTG 225
||||| |||||||| ||||||||||||||||| ||| ||| | ||||||||||| |
Sbjct 466612 TGGTTCCTAGGACCATCGTAATGATTAATAGGGGCAGTTGGGTGCACCAGTATTCAATCG 466553
Query 226 TCAGAGGTGAAATTCTTGGATTT 248
|||||||||||||||||||||||
Sbjct 466552 TCAGAGGTGAAATTCTTGGATTT 466530
>seq235
Length=547
Score = 84.2 bits (92), Expect = 4e-14
Identities = 56/61 (92%), Gaps = 1/61 (2%)
Strand=Plus/Minus
Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317
|||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||
Sbjct 547 TAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GAACGAAAGTTAGGG 489
Query 318 G 318
|
Sbjct 488 G 488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915194893184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |