Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq52 349 6e-94 seq520 188 1e-45 seq336 149 1e-33 seq542 100 5e-19 seq235 84.2 4e-14 >seq52 Length=224 Score = 349 bits (386), Expect = 6e-94 Identities = 210/221 (95%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||| Sbjct 221 CAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTA 162 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 161 GCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 102 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 101 TGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 42 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATG 287 ||||||||||||||||||||||||||| || ||||||||| Sbjct 41 TTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATG 1 >seq520 Length=96894 Score = 188 bits (208), Expect = 1e-45 Identities = 193/251 (77%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG 127 |||||||||||||| ||||||||| ||| | ||| |||||| | || |||| ||||| Sbjct 91213 AGGACTTTTACTTTAAAAAAATTAAAGTACTTTAAGTAGGCCTATACTTAAATATATTAG 91272 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 || |||||||| |||| |||| |||||||||| || |||| || ||| | |||| Sbjct 91273 TATAGAATAATAAAATAAAACGTATAGTTCTATTTTATTAGTTTTTAAGACTACTATAAT 91332 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||||||||||||||| ||||| | |||||| |||| | |||||| |||||||| |||| Sbjct 91333 AATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATT 91392 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||| |||||||| || | ||||| || || || || |||| ||| || | ||| Sbjct 91393 TATTAAAGACTAAATATTATAAAAGCATTTACTAAAAATATTTTTATTTATTA-AGAATA 91451 Query 308 AAAGTTAGGGG 318 ||||||| ||| Sbjct 91452 AAAGTTAAGGG 91462 >seq336 Length=139612 Score = 149 bits (164), Expect = 1e-33 Identities = 95/101 (94%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 39142 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTG 39201 Query 279 CCAAGGATG-TTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||| |||||||| ||||| |||||||||||||||| Sbjct 39202 CCAAGGATGNTTTTCATTTATCAG-GAACGAAAGTTAGGGG 39241 >seq542 Length=508980 Score = 100 bits (110), Expect = 5e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 166 TGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTG 225 ||||| |||||||| ||||||||||||||||| ||| ||| | ||||||||||| | Sbjct 466612 TGGTTCCTAGGACCATCGTAATGATTAATAGGGGCAGTTGGGTGCACCAGTATTCAATCG 466553 Query 226 TCAGAGGTGAAATTCTTGGATTT 248 ||||||||||||||||||||||| Sbjct 466552 TCAGAGGTGAAATTCTTGGATTT 466530 >seq235 Length=547 Score = 84.2 bits (92), Expect = 4e-14 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 |||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||| Sbjct 547 TAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GAACGAAAGTTAGGG 489 Query 318 G 318 | Sbjct 488 G 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915194893184