Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq235 336 3e-90 seq520 127 3e-27 >seq235 Length=547 Score = 336 bits (372), Expect = 3e-90 Identities = 224/245 (91%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 60 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||||||||||| |||| || ||| ||||||||||||||||||| || | ||| || | Sbjct 61 CAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCGTACTGCCAAAG-C 118 Query 135 GATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 119 AATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAAGCAGACAAATCA 178 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| Sbjct 179 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAAAGAGCTCTCAAT 238 Query 254 CTGTC 258 ||||| Sbjct 239 CTGTC 243 >seq520 Length=96894 Score = 127 bits (140), Expect = 3e-27 Identities = 159/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98 |||| |||||| || || | | |||| ||||| ||| ||||||| ||| ||| |||| | Sbjct 91925 AGAATATCTAAAGGTATTATAAACCTATTATTACCTTAAACTTCTATTAGCTT-AAGCTA 91867 Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 |||||||||||||||||| || | || | ||| |||||||| | |||||| Sbjct 91866 ATAGTCCCTCTAAGAAGCTAGTATACTACTAAAGTAATATAAGCTATTTAATAAGTTAAG 91807 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| || |||| |||||| | | |||| |||| || ||||||||||||| || Sbjct 91806 GTCTTATTTATTATTATAATTAAGTAAATAAATTACTCTACTAACTAAGAACGGCTATAT 91747 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 || || || ||| ||| || |||||||| | ||||| Sbjct 91746 ACTACTACTTATAAAATTAAAAAAGAGCTCTTAATCT 91710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796795692798